Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047355_P001 | Maize | nucleus | 27.88 | 84.0 |
| Solyc10g017640.1.1 | Tomato | nucleus | 21.68 | 80.33 |
| KRH48297 | Soybean | nucleus | 28.32 | 71.91 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 67.7 | 70.18 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 69.91 | 68.7 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 69.47 | 68.26 |
| OQU93352 | Sorghum | nucleus | 69.91 | 67.81 |
| Zm00001d047356_P002 | Maize | nucleus | 35.4 | 67.23 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 67.7 | 66.23 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 66.37 | 65.79 |
| Os10t0536100-01 | Rice | nucleus | 67.7 | 65.67 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 40.27 | 59.09 |
| KRH00625 | Soybean | nucleus | 48.67 | 52.63 |
| CDY37054 | Canola | nucleus | 49.56 | 52.58 |
| Bra039324.1-P | Field mustard | nucleus | 49.56 | 52.58 |
| KRH40554 | Soybean | nucleus | 48.67 | 52.13 |
| CDY69077 | Canola | nucleus | 48.67 | 51.64 |
| CDY27368 | Canola | nucleus | 48.67 | 51.64 |
| CDX74755 | Canola | nucleus | 48.67 | 51.64 |
| Bra004928.1-P | Field mustard | nucleus | 48.67 | 51.64 |
| AT2G45660.1 | Thale cress | nucleus | 48.23 | 50.93 |
| Bra000393.1-P | Field mustard | nucleus | 47.35 | 50.23 |
| CDY53886 | Canola | nucleus | 46.9 | 49.77 |
| CDY60689 | Canola | nucleus | 46.02 | 48.83 |
| PGSC0003DMT400026576 | Potato | nucleus | 45.58 | 48.13 |
| PGSC0003DMT400000028 | Potato | nucleus | 46.9 | 47.32 |
| KRH65189 | Soybean | nucleus | 46.9 | 44.73 |
| EES01980 | Sorghum | nucleus | 28.76 | 39.88 |
| OQU86329 | Sorghum | nucleus | 29.2 | 38.6 |
| KRH48299 | Soybean | nucleus | 20.8 | 34.31 |
| KXG25532 | Sorghum | nucleus, plastid | 29.65 | 26.69 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1B6QM74 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | EnsemblPlants:KXG39016 | ProteinID:KXG39016 | ProteinID:KXG39016.1 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3001G314400 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002206FE1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:-:60184509..60196903
Molecular Weight (calculated)
25932.2 Da
IEP (calculated)
10.087
GRAVY (calculated)
-0.834
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTELKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLIVFSP RGKLYEFASA ASLQKTIDRY RTYTRENVNN KTVQQDIQQV KADAVSLANR
101: LEALEKTKRK FLGENLEECS IEELHNLEVK LAKSLHVIRG KKTQLLEQQI TKLKEKERNL LKDNKELRDK QRNLQPPPEA PPVLNRCLPP WPRNLPAPPS
201: NDDMDVETEL YIGLPGRERS SNRDSG
101: LEALEKTKRK FLGENLEECS IEELHNLEVK LAKSLHVIRG KKTQLLEQQI TKLKEKERNL LKDNKELRDK QRNLQPPPEA PPVLNRCLPP WPRNLPAPPS
201: NDDMDVETEL YIGLPGRERS SNRDSG
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.