Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042315_P001 | Maize | nucleus | 37.42 | 87.14 |
| Os01t0922800-01 | Rice | nucleus | 72.39 | 71.95 |
| OQU86329 | Sorghum | nucleus | 68.71 | 65.5 |
| Solyc10g017640.1.1 | Tomato | nucleus | 22.7 | 60.66 |
| TraesCS3A01G434700.1 | Wheat | nucleus | 32.52 | 51.96 |
| KRH48297 | Soybean | nucleus | 26.38 | 48.31 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 36.2 | 46.83 |
| KXG39016 | Sorghum | nucleus | 39.88 | 28.76 |
| KRH00625 | Soybean | nucleus | 35.58 | 27.75 |
| KRH40554 | Soybean | nucleus | 35.58 | 27.49 |
| CDY37054 | Canola | nucleus | 33.13 | 25.35 |
| Bra039324.1-P | Field mustard | nucleus | 33.13 | 25.35 |
| CDY27368 | Canola | nucleus | 33.13 | 25.35 |
| KXG25532 | Sorghum | nucleus, plastid | 38.65 | 25.1 |
| OQU93352 | Sorghum | nucleus | 35.58 | 24.89 |
| Bra000393.1-P | Field mustard | nucleus | 32.52 | 24.88 |
| Bra004928.1-P | Field mustard | nucleus | 32.52 | 24.88 |
| CDX74755 | Canola | nucleus | 32.52 | 24.88 |
| CDY69077 | Canola | nucleus | 32.52 | 24.88 |
| CDY60689 | Canola | nucleus | 32.52 | 24.88 |
| CDY53886 | Canola | nucleus | 32.52 | 24.88 |
| AT2G45660.1 | Thale cress | nucleus | 32.52 | 24.77 |
| PGSC0003DMT400026576 | Potato | nucleus | 31.9 | 24.3 |
| PGSC0003DMT400000028 | Potato | nucleus | 31.29 | 22.77 |
| KRH65189 | Soybean | nucleus | 32.52 | 22.36 |
| KRH48299 | Soybean | nucleus | 6.13 | 7.3 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:8079807 | UniProt:C5XGC1 | ncoils:Coil | EnsemblPlants:EES01980 |
| ProteinID:EES01980 | ProteinID:EES01980.1 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | GO:GO:0048576 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3003G406800 |
| SUPFAM:SSF55455 | unigene:Sbi.9608 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001A85193 | RefSeq:XP_002456860.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:71436261..71447004
Molecular Weight (calculated)
18095.0 Da
IEP (calculated)
9.031
GRAVY (calculated)
-0.895
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRGRVELR RIEDKASRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PGGKLYEYSS TSIEDTYDRY QQFAGAGRNV NGDNNDNPDV AASDLQSRLK
101: EIATWSEQHN AEESDANELE KLEKLLANAL RNTKTKRMLA KQNNGGAGTS TGNQNSNGPS SHE
101: EIATWSEQHN AEESDANELE KLEKLLANAL RNTKTKRMLA KQNNGGAGTS TGNQNSNGPS SHE
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
Arabidopsis Description
AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.