CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87860
EER94653
EER95078
EER95086
EER97442
EES01097
EES01452
EES01980
EES02157
EES10230
EES13089
EES14166
EES18282
EES19838
KXG20293
KXG20294
KXG20296
KXG20299
KXG21076
KXG21918
KXG22896
KXG25532
KXG26019
KXG33790
KXG39016
OQU75582
OQU75597
OQU78068
OQU78328
OQU82754
OQU83580
OQU86329
OQU87658
OQU90176
OQU93352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	EER97442	AT1G03840.1	17785527
AT3G54220.1	EES02157	AT1G03840.1	17785527
AT3G54220.1	KXG20293	AT1G07920.1	19228333
AT3G54220.1	KXG20294	AT1G07920.1	19228333
AT3G54220.1	KXG20296	AT1G07920.1	19228333
AT3G54220.1	KXG20299	AT1G07920.1	19228333
AT3G54220.1	OQU75582	AT1G07920.1	19228333
AT3G54220.1	OQU75597	AT1G07920.1	19228333
AT3G54220.1	KXG20293	AT1G07930.1	19228333
AT3G54220.1	KXG20294	AT1G07930.1	19228333
AT3G54220.1	KXG20296	AT1G07930.1	19228333
AT3G54220.1	KXG20299	AT1G07930.1	19228333
AT3G54220.1	OQU75582	AT1G07930.1	19228333
AT3G54220.1	OQU75597	AT1G07930.1	19228333
AT3G54220.1	OQU87658	AT1G27050.1	19228333
AT3G54220.1	EES10230	AT1G72160.1	19228333
AT3G54220.1	KXG33790	AT1G72160.1	19228333
AT3G54220.1	OQU78068	AT1G72160.1	19228333
AT3G54220.1	EES13089	AT1G75750.1	19228333
AT3G54220.1	EES18282	AT1G75750.1	19228333
AT3G54220.1	KXG21918	AT1G75750.1	19228333
AT3G54220.1	EER95078	AT1G78570.1	19228333
AT3G54220.1	EER95086	AT1G78570.1	19228333
AT3G54220.1	EES01097	AT2G01540.1	19228333
AT3G54220.1	EER87860	AT2G19760.1	21798944
AT3G54220.1	EES01452	AT2G19760.1	21798944
AT3G54220.1	EES19838	AT2G19760.1	21798944
AT3G54220.1	OQU78328	AT2G19760.1	21798944
AT3G54220.1	EES01980	AT2G45660.1	19228333
AT3G54220.1	KXG25532	AT2G45660.1	19228333
AT3G54220.1	KXG39016	AT2G45660.1	19228333
AT3G54220.1	OQU86329	AT2G45660.1	19228333
AT3G54220.1	OQU93352	AT2G45660.1	19228333
AT3G54220.1	EES14166	AT3G12280.1	22921914
AT3G54220.1	KXG21076	AT3G12280.1	22921914
AT3G54220.1	KXG26019	AT3G12280.1	22921914
AT3G54220.1	OQU83580	AT3G12280.1	22921914
AT3G54220.1	KXG22896	AT3G54220.1	17785527
AT3G54220.1	OQU82754	AT3G54220.1	17785527
AT3G54220.1	EER87860	AT4G29350.1	21798944
AT3G54220.1	EES01452	AT4G29350.1	21798944
AT3G54220.1	EES19838	AT4G29350.1	21798944
AT3G54220.1	OQU78328	AT4G29350.1	21798944
AT3G54220.1	EER94653	AT4G37650.1	17446396
AT3G54220.1	OQU90176	AT4G37650.1	17446396
AT3G54220.1	EER94653	AT4G37650.1	17785527
AT3G54220.1	OQU90176	AT4G37650.1	17785527
AT3G54220.1	EER94653	AT4G37650.1	18500650
AT3G54220.1	OQU90176	AT4G37650.1	18500650
AT3G54220.1	EER94653	AT4G37650.1	22921914
AT3G54220.1	OQU90176	AT4G37650.1	22921914
AT3G54220.1	EER87860	AT5G56600.1	21798944
AT3G54220.1	EES01452	AT5G56600.1	21798944
AT3G54220.1	EES19838	AT5G56600.1	21798944
AT3G54220.1	OQU78328	AT5G56600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007056.1-P	Field mustard	mitochondrion, plastid	48.01	80.06
HORVU5Hr1G045920.2	Barley	cytosol	80.27	72.31
TraesCS4A01G191300.1	Wheat	cytosol	81.02	69.21
Os11t0124300-01	Rice	nucleus, plastid	84.63	68.51
TraesCS5B01G143100.1	Wheat	plastid	81.4	67.24
Os12t0122000-01	Rice	plastid	83.87	66.97
OQU82754	Sorghum	plastid	89.18	66.1
Zm00001d005029_P001	Maize	plastid	85.01	66.08
TraesCS5A01G144000.1	Wheat	plastid	81.02	65.9
TraesCS5D01G148000.1	Wheat	plastid	81.21	65.54
TraesCS4B01G124000.1	Wheat	plastid	81.02	62.89
TraesCS4D01G122000.1	Wheat	plastid	81.02	62.89
GSMUA_Achr11P...	Banana	plastid	66.6	61.15
CDX78219	Canola	nucleus, plastid	65.84	57.55
CDX73496	Canola	nucleus, plastid	66.03	55.95
AT3G54220.1	Thale cress	nucleus, plastid	66.22	53.45
GSMUA_Achr8P09400_001	Banana	cytosol	68.12	53.42
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	66.6	49.65
KXG36498	Sorghum	cytosol, plastid	43.07	49.35
VIT_08s0056g00050.t01	Wine grape	nucleus	68.88	46.42
Solyc10g074680.1.1	Tomato	cytosol	69.07	44.07
PGSC0003DMT400043358	Potato	cytosol	68.88	43.95
KRH40615	Soybean	nucleus, plastid	66.03	42.28
KRH00551	Soybean	nucleus, plastid	65.84	41.21
OQU83473	Sorghum	cytosol	30.55	38.15
EES18409	Sorghum	cytosol	32.45	34.69
OQU87235	Sorghum	extracellular	18.98	33.9
EES02045	Sorghum	cytosol, plastid	27.89	32.03
KXG29713	Sorghum	cytosol	22.58	29.97
OQU81603	Sorghum	cytosol	18.6	27.37
OQU76691	Sorghum	cytosol, extracellular	23.91	26.92
EES16518	Sorghum	cytosol	22.58	26.44
EES09233	Sorghum	cytosol	23.91	25.87
EES01920	Sorghum	cytosol	26.19	25.7
EER93592	Sorghum	cytosol	29.98	25.2
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	26.38	24.87
EER87757	Sorghum	mitochondrion	28.65	23.7
KXG23987	Sorghum	cytosol	22.96	23.05
OQU77884	Sorghum	plasma membrane	18.79	21.76
KXG22822	Sorghum	mitochondrion	23.72	21.66
OQU77885	Sorghum	cytosol	19.35	21.16

Protein Annotations

EnsemblPlants:KXG22896	EnsemblPlantsGene:SORBI_3008G023401	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF12	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG22896	ProteinID:KXG22896.2	SEG:seg
UniParc:UPI000B8BAF3B	UniProt:A0A1B6PAZ3	MapMan:15.5.12	MapMan:26.3.1.5	:	:

Description

hypothetical protein

Coordinates

chr8:-:2060708..2063702

Molecular Weight (calculated)

56402.2 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.089

Length

527 amino acids

Sequence
(BLAST)

001: AAEVAAAAAP STTAWVDGII RDIIGSSGGA GVSVAQLIHN VREIIHPCNP GLASLLELRL RSLLAPADPA PLHPPLLHAA PHVAALPPAP PPPPPLHSAE
101: KHCPPPPQQD QEPNNPPAPS QSPKAPTAEE TAAAAAKERK EEPRRRQRDE EGLHLLTLLL QCAEAVNADN LDDAHRCLLE IAELATPFGT STHRVAAYFA
201: EAMSARLVTS CLGIYAPLPP GNPVAARLHG RGVAAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA SRPGGPPRVR
301: LTGLGASMDA LQATGKRLSD FADTLGLPFE FCAVAEKAGN VDPEKLGVTR REAVAVHWLH HSLYDVTGSD SNTLWLIQRL APKVVTMVEQ DLSQSGSFLA
401: RFVEAIHYYS ALFDSLDASY GEDSPERHVV EQQLLSREIR NVLAVGGPAR TGDVKFVGSW REKLAQSGFR AASLAGGAAA QASLLLGMFP SDGYTLVEEN
501: GALKLGWKDL CLLTASAWRP IHQAPCR

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.