CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	67.76	67.76
EES16518	Sorghum	cytosol	39.63	42.89
CDY45059	Canola	cytosol	25.87	41.45
CDY68881	Canola	cytosol	19.92	39.75
EES02045	Sorghum	cytosol, plastid	35.11	37.25
GSMUA_Achr8P09690_001	Banana	cytosol	34.09	37.22
KXG22822	Sorghum	mitochondrion	42.3	35.7
Bra018848.1-P	Field mustard	cytosol	31.42	34.77
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	33.68	34.67
CDY22795	Canola	cytosol, plastid	31.42	34.46
Bra014251.1-P	Field mustard	cytosol	31.42	34.38
KRH29080	Soybean	cytosol	31.83	34.07
CDY03601	Canola	cytosol	31.21	33.85
KRH24106	Soybean	cytosol, nucleus, peroxisome	31.62	33.85
Solyc12g099900.1.1	Tomato	nucleus	32.24	33.55
VIT_13s0019g01220.t01	Wine grape	cytosol	32.85	33.47
AT1G50420.1	Thale cress	cytosol	33.06	33.4
OQU87235	Sorghum	extracellular	20.12	33.22
PGSC0003DMT400011839	Potato	cytosol	31.83	33.12
OQU83473	Sorghum	cytosol	27.93	32.23
Solyc01g008910.2.1	Tomato	cytosol	31.42	32.14
KRH62871	Soybean	cytosol	28.95	31.83
PGSC0003DMT400058477	Potato	cytosol	30.6	31.57
VIT_06s0009g02390.t01	Wine grape	cytosol	30.39	31.22
KRH29971	Soybean	cytosol	28.34	31.22
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	29.77	31.18
KRH27822	Soybean	nucleus, plastid	29.98	30.87
OQU77884	Sorghum	plasma membrane	27.52	29.45
OQU77885	Sorghum	cytosol	27.93	28.22
KXG29713	Sorghum	cytosol	23.0	28.21
KXG36498	Sorghum	cytosol, plastid	23.0	24.35
EES01920	Sorghum	cytosol	26.69	24.21
KXG22896	Sorghum	cytosol, plasma membrane	25.87	23.91
OQU76691	Sorghum	cytosol, extracellular	21.77	22.65
KXG23987	Sorghum	cytosol	24.23	22.48
OQU81603	Sorghum	cytosol	16.02	21.79
EES18409	Sorghum	cytosol	21.77	21.5
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	23.82	20.75
EER93592	Sorghum	cytosol	25.87	20.1
EER87757	Sorghum	mitochondrion	25.26	19.31
OQU82754	Sorghum	plastid	25.46	17.44
CDY37137	Canola	plastid	31.62	16.14
GSMUA_Achr11P...	Banana	cytosol	32.44	14.34

Protein Annotations

MapMan:15.5.12	EntrezGene:8085632	UniProt:C5Y470	EnsemblPlants:EES09233	ProteinID:EES09233	ProteinID:EES09233.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF21	EnsemblPlantsGene:SORBI_3005G029600	InterPro:TF_GRAS
UniParc:UPI0001A867BE	RefSeq:XP_002450245.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2618564..2621041

Molecular Weight (calculated)

52107.7 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.180

Length

487 amino acids

Sequence
(BLAST)

001: MHPAMPTQSD DDDVSSSMHL VQDLCECAGH VEAGAIERAG RCLARATGDL AAAAGDDGPL RRLAVPMADA LARRLVRLMV PAVADALIDP SDHLDPRCVR
101: AARRRFFELS PFFRAAAAVT NRAILEAMEN EKNVHVIDFA GPTAQPCQWI QLLREFHRRP GGPPHLRLTI VHDDGDLLAN ISERLAKENE ELDVPLQVHR
201: VVSQIEALDP TDLHGVLGLK SGEARAVVCT LQLHRLLAAA DDPAGTFSAG HRFNQTASVA RLQQMASTSC PPSVGACRAG GGGGGYDDDD DIDSSPATPM
301: GFVSPPLSTP QLQMPPALAS FLSAAGALSP EVVVVTEQEA SHGGVSFRKR FGEALGYYAA VYDSLDAAAE AYRRPAAERA EVERAVLGEE IRDVLLRDGA
401: HRRERHDRLQ RWAARMELGG FRSVPLSYAA VRQGNDVLHR CGLIGCGAAP ASREHGGCLL LCWSSSPLYS VSAWRPDARS GAPGSCS

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.