CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042127_P001	Maize	plastid	93.68	96.2
HORVU3Hr1G106260.1	Barley	cytosol	35.95	92.18
Zm00001d011881_P001	Maize	cytosol	89.76	91.76
Os01t0948200-00	Rice	cytosol	86.06	89.37
TraesCS3A01G487500.1	Wheat	cytosol, plastid	85.4	87.7
TraesCS3D01G482600.1	Wheat	cytosol	86.27	87.03
TraesCS3B01G535100.1	Wheat	cytosol	84.75	85.87
GSMUA_Achr8P09690_001	Banana	cytosol	61.0	62.78
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	61.0	59.2
CDY68881	Canola	cytosol	30.07	56.56
CDY45059	Canola	cytosol	36.6	55.26
Bra018848.1-P	Field mustard	cytosol	50.54	52.73
Bra014251.1-P	Field mustard	cytosol	50.98	52.58
PGSC0003DMT400011839	Potato	cytosol	52.94	51.92
Solyc12g099900.1.1	Tomato	nucleus	52.72	51.71
CDY03601	Canola	cytosol	50.54	51.67
CDY22795	Canola	cytosol, plastid	49.89	51.58
PGSC0003DMT400058477	Potato	cytosol	52.29	50.85
Solyc01g008910.2.1	Tomato	cytosol	52.72	50.84
VIT_13s0019g01220.t01	Wine grape	cytosol	52.94	50.84
VIT_06s0009g02390.t01	Wine grape	cytosol	52.29	50.63
AT1G50420.1	Thale cress	cytosol	52.07	49.59
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	49.46	48.82
KRH29080	Soybean	cytosol	48.37	48.79
KRH24106	Soybean	cytosol, nucleus, peroxisome	47.71	48.13
KRH27822	Soybean	nucleus, plastid	49.02	47.57
KRH62871	Soybean	cytosol	40.96	42.44
KRH29971	Soybean	cytosol	40.74	42.31
OQU83473	Sorghum	cytosol	33.55	36.49
OQU77884	Sorghum	plasma membrane	36.17	36.48
OQU87235	Sorghum	extracellular	23.09	35.93
EES16518	Sorghum	cytosol	35.08	35.78
EES09233	Sorghum	cytosol	37.25	35.11
KXG22822	Sorghum	mitochondrion	42.92	34.14
OQU77885	Sorghum	cytosol	35.29	33.61
KXG29713	Sorghum	cytosol	26.8	30.98
KXG36498	Sorghum	cytosol, plastid	28.98	28.91
KXG22896	Sorghum	cytosol, plasma membrane	32.03	27.89
OQU76691	Sorghum	cytosol, extracellular	27.45	26.92
EES01920	Sorghum	cytosol	31.37	26.82
EES18409	Sorghum	cytosol	26.8	24.95
EER93592	Sorghum	cytosol	32.9	24.08
GSMUA_Achr11P...	Banana	cytosol	57.73	24.05
CDY37137	Canola	plastid	49.89	24.0
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	29.19	23.97
KXG23987	Sorghum	cytosol	27.23	23.81
OQU81603	Sorghum	cytosol	18.3	23.46
OQU82754	Sorghum	plastid	32.46	20.96
EER87757	Sorghum	mitochondrion	28.98	20.88

Protein Annotations

MapMan:15.5.12	EntrezGene:8081328	UniProt:C5XHT9	EnsemblPlants:EES02045	ProteinID:EES02045	ProteinID:EES02045.1
GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
EnsemblPlantsGene:SORBI_3003G423900	InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI0001A84B3E	RefSeq:XP_002456925.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:72825625..72828463

Molecular Weight (calculated)

49554.8 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.158

Length

459 amino acids

Sequence
(BLAST)

001: MVQDEGSSSS VTSSSLHNFS TMPLHASPGA GAAASPTTPP WLARELRSDE RGLCLIHLLL NCAAAAGAGR LDAANAALEH IAALASPDGD AMQRVAAAFA
101: EALARRALRA WPGLCRALLL PRAGPTPAEL AVARRHFLDL CPFLRLAGAA ANQSVLEAME SEKIVHVVDL GGADATQWLE LLHLLAARPE GPPHLRLTAV
201: HEHRDVLTQT AMVLTKEAER LDVPFQFNPV VSRLEALDVE SLRVKTGEAL AVTSSLQLHC LLASDDDSSG KDGHHHQSSN GKGGDTNKRP RSPESGVSPS
301: TSRADAFLGA LWGLSPKVVV VTEQEASHNA APLTERFVEA LNYYAALFDC LESAAPRGSV ERARVERWLL GEEVKNIVAC DGADRRERHE RLDRWAARME
401: GAGFARVPLS YYALLQARRA AQGLGCDGFK VREEKGAFFL CWQDRAIFSV SAWRGRRFD

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.