CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G534700.1	Wheat	cytosol	33.41	48.41
HORVU2Hr1G113490.1	Barley	cytosol	33.41	48.25
HORVU2Hr1G113480.1	Barley	cytosol	33.41	48.25
TraesCS6D01G055100.1	Wheat	cytosol	31.43	45.54
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	30.55	44.55
OQU77885	Sorghum	cytosol	46.81	44.19
TraesCS2A01G532900.1	Wheat	cytosol	38.9	41.16
HORVU2Hr1G113360.1	Barley	cytosol	40.22	38.53
TraesCS2B01G562400.1	Wheat	cytosol	39.34	37.76
CDY68881	Canola	cytosol	20.0	37.3
TraesCSU01G014000.1	Wheat	cytosol	23.74	36.73
CDY45059	Canola	cytosol	24.4	36.51
EES02045	Sorghum	cytosol, plastid	36.48	36.17
GSMUA_Achr8P09690_001	Banana	cytosol	33.85	34.53
Bra018848.1-P	Field mustard	cytosol	30.77	31.82
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	32.97	31.71
CDY22795	Canola	cytosol, plastid	30.55	31.31
Bra014251.1-P	Field mustard	cytosol	30.55	31.24
CDY03601	Canola	cytosol	30.11	30.51
Solyc12g099900.1.1	Tomato	nucleus	30.99	30.13
KRH24106	Soybean	cytosol, nucleus, peroxisome	29.89	29.89
KRH29080	Soybean	cytosol	29.89	29.89
PGSC0003DMT400011839	Potato	cytosol	30.55	29.7
KRH29971	Soybean	cytosol	28.79	29.64
AT1G50420.1	Thale cress	cytosol	31.21	29.46
EES16518	Sorghum	cytosol	29.01	29.33
VIT_06s0009g02390.t01	Wine grape	cytosol	30.55	29.32
KRH62871	Soybean	cytosol	28.13	28.89
PGSC0003DMT400058477	Potato	cytosol	29.89	28.81
VIT_13s0019g01220.t01	Wine grape	cytosol	30.11	28.66
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	29.23	28.6
Solyc01g008910.2.1	Tomato	cytosol	29.89	28.57
Os05t0378200-00	Rice	cytosol	34.29	28.31
OQU87235	Sorghum	extracellular	18.24	28.14
EES09233	Sorghum	cytosol	29.45	27.52
KRH27822	Soybean	nucleus, plastid	28.35	27.27
OQU83473	Sorghum	cytosol	25.05	27.01
KXG29713	Sorghum	cytosol	20.88	23.93
KXG22822	Sorghum	mitochondrion	30.11	23.74
KXG36498	Sorghum	cytosol, plastid	23.3	23.04
EES01920	Sorghum	cytosol	25.27	21.42
KXG23987	Sorghum	cytosol	23.74	20.57
EES18409	Sorghum	cytosol	21.32	19.68
OQU76691	Sorghum	cytosol, extracellular	19.56	19.02
KXG22896	Sorghum	cytosol, plasma membrane	21.76	18.79
OQU81603	Sorghum	cytosol	14.51	18.44
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.42	18.25
EER87757	Sorghum	mitochondrion	23.96	17.11
EER93592	Sorghum	cytosol	23.08	16.75
CDY37137	Canola	plastid	30.55	14.57
OQU82754	Sorghum	plastid	22.64	14.49
GSMUA_Achr11P...	Banana	cytosol	30.99	12.79

Protein Annotations

EnsemblPlants:OQU77884	EnsemblPlantsGene:SORBI_3009G117700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF123	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU77884	ProteinID:OQU77884.1	SEG:seg
UniParc:UPI000B8B99CA	UniProt:A0A1Z5R283	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46274964..46276331

Molecular Weight (calculated)

49657.9 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.046

Length

455 amino acids

Sequence
(BLAST)

001: MMQQASMQWG AVAAPTVILP AFQQLDSNRI QLIKEVMQHC INALATGNVL AANTGLVLMS TLSSAAGDPL QRVAFSFAEA LGRRALQQML PGLYGGLLRL
101: DFPPQPPAVG YTCTTRLSFD ALCPLLRVAA SAANHEIVTA MEGEEHVHVV DLGGASPNQW IELLHLFAVR PGGKPSSLRL TVVSEEERLL SAASWLLHWE
201: AARLHIPFVF NPVRSHIDRL CPHDVASFGV VPGGGEALAI TSTLQLHRLI ADVTSSNDLP PAADSADHQH RGKKRKGKQP PPPPKHEITM ADALLRVLCD
301: LSPKVMVLTE QEANHNGGSL GDRVRNAFDY YAALFNDLEA GGAPRASADR AALERTLLRQ EIMDIVARDG TSRRERHEGV MAWAQRMGMA GFQPMHLQVR
401: RFDAFADPGL LALQLSMHGT LRYWVAQDNT CFIIYANMTP MFSVTAWRPA TTTGE

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.