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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G089730.1
HORVU3Hr1G059830.7

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G50420.1 HORVU1Hr1G089730.1 AT4G22220.1 21798944
AT1G50420.1 HORVU3Hr1G059830.7 AT4G22220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G113480.1 Barley cytosol 100.0 100.0
TraesCS2D01G055700.1 Wheat extracellular, golgi, mitochondrion, plastid 78.41 79.17
TraesCSU01G014000.1 Wheat cytosol 61.27 65.65
HORVU2Hr1G113360.1 Barley cytosol 77.14 51.16
HORVU3Hr1G106260.1 Barley cytosol 26.98 47.49
CDY68881 Canola cytosol 31.11 40.16
CDY45059 Canola cytosol 38.41 39.8
OQU77884 Sorghum plasma membrane 48.25 33.41
Zm00001d037901_P001 Maize cytosol, peroxisome, plastid 47.94 32.68
HORVU3Hr1G088820.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 25.71 31.15
OQU77885 Sorghum cytosol 46.98 30.71
GSMUA_Achr8P09690_001 Banana cytosol 40.95 28.92
Os05t0378200-00 Rice cytosol 48.89 27.95
Bra014251.1-P Field mustard cytosol 38.41 27.19
GSMUA_Achr11P... Banana cytosol, nucleus, peroxisome, plastid 40.63 27.06
Bra018848.1-P Field mustard cytosol 37.78 27.05
CDY22795 Canola cytosol, plastid 38.1 27.03
KRH24106 Soybean cytosol, nucleus, peroxisome 38.73 26.81
KRH29080 Soybean cytosol 38.41 26.59
CDY03601 Canola cytosol 37.78 26.5
Solyc12g099900.1.1 Tomato nucleus 38.73 26.07
PGSC0003DMT400011839 Potato cytosol 38.41 25.85
KRH29971 Soybean cytosol 36.19 25.79
VIT_13s0019g01220.t01 Wine grape cytosol 38.73 25.52
AT1G50420.1 Thale cress cytosol 39.05 25.52
PGSC0003DMT400058477 Potato cytosol 38.1 25.42
KRH62871 Soybean cytosol 35.56 25.28
Solyc01g008910.2.1 Tomato cytosol 38.1 25.21
VIT_06s0009g02390.t01 Wine grape cytosol 37.46 24.89
KRH77666 Soybean endoplasmic reticulum, nucleus, peroxisome, plastid 35.24 23.87
HORVU5Hr1G043310.1 Barley cytosol 41.27 23.64
HORVU4Hr1G026010.3 Barley cytosol 32.06 22.65
KRH27822 Soybean nucleus, plastid 33.97 22.62
HORVU7Hr1G091000.1 Barley cytosol 27.3 20.19
HORVU0Hr1G003230.2 Barley mitochondrion 28.89 19.65
HORVU6Hr1G033280.1 Barley cytosol 27.62 19.51
HORVU3Hr1G088780.2 Barley cytosol 31.75 18.83
HORVU1Hr1G069140.1 Barley cytosol 26.98 18.2
HORVU4Hr1G008930.3 Barley cytosol, mitochondrion 20.0 17.85
HORVU3Hr1G058100.1 Barley plastid 31.75 17.76
HORVU1Hr1G090800.1 Barley mitochondrion 29.21 17.16
HORVU7Hr1G010620.1 Barley cytosol 27.62 15.45
HORVU4Hr1G006930.1 Barley nucleus 29.84 15.21
HORVU5Hr1G045920.2 Barley cytosol 27.62 14.87
HORVU4Hr1G008980.3 Barley mitochondrion, nucleus 26.03 14.83
HORVU0Hr1G004640.1 Barley mitochondrion, nucleus, plastid 22.54 14.82
CDY37137 Canola plastid 38.1 12.58
GSMUA_Achr11P... Banana cytosol 40.63 11.62
Protein Annotations
EnsemblPlants:HORVU2Hr1G113490.1EnsemblPlantsGene:HORVU2Hr1G113490GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF123PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI00029496EAUniProt:M0YYM9
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr2H:-:728906883..728907830
Molecular Weight (calculated)
35030.5 Da
IEP (calculated)
7.253
GRAVY (calculated)
0.024
Length
315 amino acids
Sequence
(BLAST)
001: MCPFLRLAGT TANYAIIDAA RTVRNAVLHV VDLGGADPAQ WLLLLRLFAK RPGAGAHDQI LRLTIVNEDN EFLSGTAALL AREAKILHIA LQFHPVKLHI
101: DQLLSIDRLG VRGGEALFIV STLQLHRLLA DGFAEVAARP DDRKGKRQVQ AHATMTRADA LLRDLAGLSP KLMVVTEQEA DHNGDFKARF ENALNYYGAL
201: FDALEESVPA RGSALERADV ERCLLLQEIR DIVACDGAQR RERHEWMVKW ADRMQAAGFE PVAMRADTVA QTVMLGQMLA GCSRAYRVIS SEKDVCFFIC
301: WRDIPMFSVS TWRAV
Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.