CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, peroxisome

Predictor Summary:

nucleus 3
plastid 3
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03283
KRH19966
KRH54391
KRH57077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	KRH03283	AT4G22220.1	21798944
AT1G50420.1	KRH19966	AT4G22220.1	21798944
AT1G50420.1	KRH54391	AT4G22220.1	21798944
AT1G50420.1	KRH57077	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27822	Soybean	nucleus, plastid	92.47	90.91
KRH29080	Soybean	cytosol	72.26	73.85
KRH24106	Soybean	cytosol, nucleus, peroxisome	71.83	73.41
VIT_06s0009g02390.t01	Wine grape	cytosol	69.68	68.35
Solyc12g099900.1.1	Tomato	nucleus	67.74	67.31
PGSC0003DMT400011839	Potato	cytosol	67.74	67.31
CDY68881	Canola	cytosol	35.27	67.21
CDY45059	Canola	cytosol	43.87	67.11
PGSC0003DMT400058477	Potato	cytosol	66.67	65.68
Solyc01g008910.2.1	Tomato	cytosol	66.67	65.13
Bra014251.1-P	Field mustard	cytosol	60.86	63.6
Bra018848.1-P	Field mustard	cytosol	59.78	63.18
CDY22795	Canola	cytosol, plastid	59.57	62.39
CDY03601	Canola	cytosol	60.22	62.36
AT1G50420.1	Thale cress	cytosol	63.87	61.62
GSMUA_Achr8P09690_001	Banana	cytosol	56.13	58.52
HORVU3Hr1G106260.1	Barley	cytosol	21.94	56.98
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	55.7	54.76
KRH29971	Soybean	cytosol	49.89	52.49
Os01t0948200-00	Rice	cytosol	49.46	52.04
TraesCS3A01G487500.1	Wheat	cytosol, plastid	49.89	51.9
Zm00001d042127_P001	Maize	plastid	49.46	51.45
TraesCS3B01G535100.1	Wheat	cytosol	50.11	51.43
KRH62871	Soybean	cytosol	48.82	51.24
TraesCS3D01G482600.1	Wheat	cytosol	49.89	50.99
Zm00001d011881_P001	Maize	cytosol	49.03	50.78
EES02045	Sorghum	cytosol, plastid	48.82	49.46
Os06t0211500-00	Rice	cytosol	16.77	40.84
Os12t0138100-00	Rice	cytosol	40.22	38.01
Os11t0141500-00	Rice	cytosol	40.0	37.8
Zm00001d023248_P001	Maize	cytosol	40.86	37.55
TraesCS5A01G135000.1	Wheat	mitochondrion	42.15	35.32
HORVU2Hr1G113480.1	Barley	cytosol	23.87	35.24
HORVU2Hr1G113490.1	Barley	cytosol	23.87	35.24
TraesCS5B01G133800.1	Wheat	mitochondrion	41.72	35.14
HORVU5Hr1G043310.1	Barley	cytosol	41.51	35.09
TraesCS5D01G139500.1	Wheat	mitochondrion	41.72	34.7
EES16518	Sorghum	cytosol	33.55	34.67
TraesCS6D01G055100.1	Wheat	cytosol	23.01	34.08
TraesCS2D01G534700.1	Wheat	cytosol	22.58	33.44
KXG22822	Sorghum	mitochondrion	40.86	32.93
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	10.32	32.88
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	21.94	32.69
TraesCS2A01G532900.1	Wheat	cytosol	29.03	31.4
HORVU4Hr1G026010.3	Barley	cytosol	29.68	30.94
TraesCS4A01G185900.1	Wheat	cytosol	29.68	30.94
Os11t0141700-00	Rice	cytosol	33.12	30.43
Os12t0138200-00	Rice	cytosol	33.12	30.2
EES09233	Sorghum	cytosol	31.18	29.77
KRG92263	Soybean	cytosol	25.38	29.57
CDY37137	Canola	plastid	60.43	29.45
TraesCS4D01G127800.2	Wheat	mitochondrion	29.89	29.26
OQU77884	Sorghum	plasma membrane	28.6	29.23
KRH29015	Soybean	cytosol	17.85	29.12
HORVU2Hr1G113360.1	Barley	cytosol	29.25	28.63
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	28.17	28.36
TraesCS2B01G562400.1	Wheat	cytosol	28.6	28.06
Zm00001d052463_P001	Maize	cytosol	31.18	27.72
TraesCSU01G014000.1	Wheat	cytosol	17.42	27.55
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	28.82	27.52
KRH34954	Soybean	cytosol	23.66	27.16
KRH57194	Soybean	cytosol	29.46	26.81
KRH29089	Soybean	mitochondrion	25.38	26.7
OQU77885	Sorghum	cytosol	27.53	26.56
KRH03910	Soybean	cytosol	29.25	26.46
KRH63032	Soybean	cytosol	27.96	25.84
Zm00001d023247_P001	Maize	plastid	30.97	25.71
KRH24117	Soybean	plastid	24.52	25.62
KRH13057	Soybean	cytosol	29.89	25.05
KRH34544	Soybean	cytosol	26.02	24.8
KRH54840	Soybean	cytosol	26.88	24.75
KRH70202	Soybean	cytosol	25.16	24.58
KRH08555	Soybean	cytosol	24.73	24.42
KRH42544	Soybean	cytosol, nucleus, plastid	26.88	24.18
KRG91825	Soybean	nucleus	24.09	24.09
KRH58636	Soybean	nucleus	26.67	23.71
KRH44884	Soybean	cytosol	21.29	22.86
KRG97933	Soybean	nucleus	28.17	22.43
GSMUA_Achr11P...	Banana	cytosol	53.12	22.41
Os05t0378500-00	Rice	plastid	26.67	22.14
Os05t0378200-00	Rice	cytosol	26.24	22.14
KRH30942	Soybean	cytosol	27.74	21.68
KRG94590	Soybean	plastid	30.75	21.0
KRH19587	Soybean	cytosol	23.66	20.91
KRH06900	Soybean	plastid	30.54	20.7
KRH32212	Soybean	cytosol	23.44	20.3
KRH24039	Soybean	cytosol	20.65	19.96
KRH03976	Soybean	mitochondrion, nucleus	27.31	18.98
KRH57249	Soybean	plastid	26.45	18.52
KRH40615	Soybean	nucleus, plastid	28.82	16.28
KRH00551	Soybean	nucleus, plastid	28.6	15.8
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.29	1.7
Os11t0141550-01	Rice	cytosol	0.22	0.78

Protein Annotations

EntrezGene:100775380	MapMan:15.5.12	EMBL:ACUP02000681	EnsemblPlantsGene:GLYMA_01G226600	GO:GO:0000989	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987
GO:GO:0043565	UniProt:I1JAF3	InterPro:IPR005202	EnsemblPlants:KRH77666	ProteinID:KRH77666	ProteinID:KRH77666.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13	InterPro:Scarecrow-like_3	InterPro:TF_GRAS
UniParc:UPI0002337701	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55497412..55500336

Molecular Weight (calculated)

52343.3 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.137

Length

465 amino acids

Sequence
(BLAST)

001: MFQEEGLSSV TSSPLQFFSM MSLSVSPSLG SPYQMKCEQR GLVLIHLLLA GANFVATGDL QNANLTLEQI SQHASLDGDT MQRIASYFSE ALADRILKTW
101: PGIHRALNSS RITMVSDEIL VQKLFFELLP FLKFSYILTN QAIVEAMEGE KMVHIVDLYG AGPAQWISLL QVLSARPEGP PHLRITGVHH KKEVLDQMAH
201: KLTEEAEKLD IPFQFNPVLS KLENLDFDKL RVKTGEALAI SSILQLHSLL ALDEDASRRK SPLLSKNSNA IHLQKGLLMN HNTLGDLLDG YSPSPDSASS
301: SPAASSSALM NSESFLNALW GLSPKVMVVT EQDFNHNCLT MMERLAEALF SYAAYFDCLE STVSRASMDR LKLEKMLFGE EIKNIIACEG CERKERHEKM
401: DRWIQRLDLS GFANVPISYY GMLQGRRFLQ TYGCEGYKMR EECGRVMICW QERSLFSITA WRPRK

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.