Factsheet for TraesCS2A01G532900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G534700.1	Wheat	cytosol	69.07	94.59
TraesCS2B01G562400.1	Wheat	cytosol	91.4	82.91
HORVU2Hr1G113360.1	Barley	cytosol	78.14	70.74
TraesCS3A01G487500.1	Wheat	cytosol, plastid	43.72	42.06
OQU77884	Sorghum	plasma membrane	41.16	38.9
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	41.63	38.74
CDY45059	Canola	cytosol	27.21	38.49
CDY68881	Canola	cytosol	21.63	38.11
OQU77885	Sorghum	cytosol	41.16	36.72
GSMUA_Achr8P09690_001	Banana	cytosol	37.67	36.32
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	37.44	34.04
Bra014251.1-P	Field mustard	cytosol	34.65	33.48
Bra018848.1-P	Field mustard	cytosol	33.95	33.18
CDY22795	Canola	cytosol, plastid	34.19	33.11
VIT_13s0019g01220.t01	Wine grape	cytosol	36.51	32.85
KRH24106	Soybean	cytosol, nucleus, peroxisome	34.65	32.75
CDY03601	Canola	cytosol	34.19	32.74
KRH29080	Soybean	cytosol	34.42	32.53
PGSC0003DMT400058477	Potato	cytosol	35.58	32.42
PGSC0003DMT400011839	Potato	cytosol	35.12	32.27
Solyc12g099900.1.1	Tomato	nucleus	35.12	32.27
Solyc01g008910.2.1	Tomato	cytosol	35.58	32.14
VIT_06s0009g02390.t01	Wine grape	cytosol	35.35	32.07
AT1G50420.1	Thale cress	cytosol	34.88	31.12
Os05t0378200-00	Rice	cytosol	39.77	31.03
KRH29971	Soybean	cytosol	31.86	31.0
KRH62871	Soybean	cytosol	31.4	30.47
TraesCS5A01G135000.1	Wheat	mitochondrion	38.37	29.73
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	31.4	29.03
TraesCS4A01G185900.1	Wheat	cytosol	29.77	28.7
KRH27822	Soybean	nucleus, plastid	30.7	27.91
TraesCS6A01G159500.1	Wheat	cytosol	24.88	27.3
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	20.23	26.69
TraesCS2A01G200700.1	Wheat	cytosol	26.98	25.78
TraesCS5A01G511900.1	Wheat	cytosol	25.81	25.46
TraesCS1A01G304000.1	Wheat	peroxisome	28.84	25.25
TraesCS7A01G382800.1	Wheat	cytosol	24.65	24.88
TraesCS3A01G233000.1	Wheat	plasma membrane	28.84	24.75
TraesCS3A01G392600.1	Wheat	cytosol	26.51	23.85
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	26.05	23.24
TraesCS3A01G392500.1	Wheat	cytosol	27.67	23.02
TraesCS3A01G392400.1	Wheat	cytosol	27.67	22.93
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	22.09	19.79
TraesCS4A01G191300.1	Wheat	cytosol	28.14	19.61
TraesCS4A01G260600.1	Wheat	cytosol	24.42	19.27
TraesCS2A01G096800.1	Wheat	nucleus	31.63	19.02
TraesCS4A01G271000.1	Wheat	cytosol	27.21	18.87
TraesCS4A01G430600.1	Wheat	plastid	26.98	18.68
TraesCS7A01G059000.1	Wheat	plastid	26.98	18.5
TraesCS5A01G144000.1	Wheat	plastid	27.44	18.21
CDY37137	Canola	plastid	33.95	15.3
GSMUA_Achr11P...	Banana	cytosol	36.98	14.43

Protein Annotations

EnsemblPlants:TraesCS2A01G532900.1	EnsemblPlantsGene:TraesCS2A01G532900	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF123
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr2A:+:749058524..749059816

Molecular Weight (calculated)

47133.6 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.035

Length

430 amino acids

Sequence
(BLAST)

001: MTFLLPDVRS AAAPTRPTAP APQNQDEERA VHLIKLLYSC AAALDEGKKE LANKGLEMIC SLATDDGEPV HRLVASFADA LALRIVQPWQ GVCRALQLPT
101: TTPAPAAAAA RRHFAVMCPF LRLAGTAANY AIIDAVQTER NAVLHVVDLG GADPGQWLLL FCFFANRPGA STHHQILRLT IVNEEDGFLS STAALLAGEA
201: EHLHIGFQFH PVKLHINELL SIEPLDVRSG EALVVVSTLQ LHRLLADEFA EAATRPHDRK GKRQAHATMT RADALLRNLA ELSPKLMVVT EQEANHNGVQ
301: FTDRFGNALK YYGALFDALE ESVPARGSAL ERADVERCLL LPEIRDIVAC DGAQRRERHE RMVDWAARME AAGFVHATMS PGTVAQTAIL ARMLAGDSRA
401: YRVCGENDGR CIFIYRDDVP MFSVSTWRTV

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.