Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 95.21 | 94.03 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 94.17 | 93.39 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 91.67 | 91.86 |
| Os04t0432100-00 | Rice | nucleus | 66.04 | 62.9 |
| OQU81603 | Sorghum | cytosol | 46.88 | 62.85 |
| Zm00001d025133_P001 | Maize | cytosol | 60.62 | 58.91 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 60.42 | 58.23 |
| VIT_18s0076g00200.t01 | Wine grape | cytosol | 31.25 | 46.01 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 42.71 | 45.96 |
| GSMUA_Achr10P... | Banana | nucleus | 41.25 | 45.1 |
| KRH34954 | Soybean | cytosol | 36.25 | 42.96 |
| PGSC0003DMT400023877 | Potato | cytosol | 34.38 | 40.05 |
| KRH08555 | Soybean | cytosol | 39.17 | 39.92 |
| KRG91825 | Soybean | nucleus | 37.92 | 39.14 |
| KRH70202 | Soybean | cytosol | 38.54 | 38.87 |
| Solyc11g017100.1.1 | Tomato | cytosol | 35.83 | 36.13 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 24.17 | 29.59 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 19.17 | 28.22 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 25.0 | 26.67 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 23.54 | 26.53 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 23.54 | 25.92 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 26.88 | 25.75 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 23.54 | 25.28 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 23.96 | 23.86 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 23.75 | 23.22 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 25.62 | 22.57 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 22.29 | 22.38 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 19.79 | 22.09 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 23.54 | 21.77 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 27.92 | 21.72 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 23.12 | 21.47 |
| TraesCS5A01G144000.1 | Wheat | plastid | 27.71 | 20.52 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 23.33 | 20.18 |
| TraesCS4A01G430600.1 | Wheat | plastid | 26.04 | 20.13 |
| TraesCS7A01G059000.1 | Wheat | plastid | 26.04 | 19.94 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 25.21 | 19.52 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 17.29 | 18.61 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 27.5 | 18.46 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G304000.1 | EnsemblPlantsGene:TraesCS2A01G304000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF19 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr2A:-:522487896..522489338
Molecular Weight (calculated)
51387.5 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.272
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTLSLGVN GGGAAAKKRK VMDGVGDVAA ADGGDRATVM MLLQARDRMV KVELDHEDGD VSGSGPSPLM RLLLSSAVAG EVGDTHAAAV ALQEVYRHAS
101: FRGGDPAQRV AAYFADALAS RLLLPPPAKA KTTTTTREEQ FLAFTMFYQA SPFYQFAHFT ANQAIVEAFE AGGRRRLHVV DFDVSFGFQW PSLIQSLSDA
201: ATTSSSQSSQ DDSGDCCDEP VSLRITGFGA SADELRDTEA RLARFADGCP NLRFEFEGVV NNGPEDGRHE RIKTDPAATV VVNLVFPAAQ NARASSWDPR
301: SALAHIRSLN PSLVFLIDKV DEGSGGGKGA GRCGSASLLP RFAANLRYYA AVFESLHECL PADSAERIAI ERDHLGVEIS DAMASLDRRR HAGDRAADQM
401: SRGWKERLES AGFEDARLSS RTVSQAKLLL KMKSGGCGGG GFRVTEAGDG KAMALGWRDR ALITATAWRP CRRSVGKNEP
101: FRGGDPAQRV AAYFADALAS RLLLPPPAKA KTTTTTREEQ FLAFTMFYQA SPFYQFAHFT ANQAIVEAFE AGGRRRLHVV DFDVSFGFQW PSLIQSLSDA
201: ATTSSSQSSQ DDSGDCCDEP VSLRITGFGA SADELRDTEA RLARFADGCP NLRFEFEGVV NNGPEDGRHE RIKTDPAATV VVNLVFPAAQ NARASSWDPR
301: SALAHIRSLN PSLVFLIDKV DEGSGGGKGA GRCGSASLLP RFAANLRYYA AVFESLHECL PADSAERIAI ERDHLGVEIS DAMASLDRRR HAGDRAADQM
401: SRGWKERLES AGFEDARLSS RTVSQAKLLL KMKSGGCGGG GFRVTEAGDG KAMALGWRDR ALITATAWRP CRRSVGKNEP
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.