Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 94.03 | 95.21 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 93.42 | 93.8 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 89.71 | 91.02 |
| OQU81603 | Sorghum | cytosol | 46.3 | 62.85 |
| Os04t0432100-00 | Rice | nucleus | 64.61 | 62.3 |
| Zm00001d025133_P001 | Maize | cytosol | 60.29 | 59.31 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 59.67 | 58.23 |
| VIT_18s0076g00200.t01 | Wine grape | cytosol | 31.07 | 46.32 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 42.18 | 45.96 |
| GSMUA_Achr10P... | Banana | nucleus | 40.74 | 45.1 |
| KRH34954 | Soybean | cytosol | 36.01 | 43.21 |
| KRH08555 | Soybean | cytosol | 39.09 | 40.34 |
| PGSC0003DMT400023877 | Potato | cytosol | 34.16 | 40.29 |
| KRG91825 | Soybean | nucleus | 37.86 | 39.57 |
| KRH70202 | Soybean | cytosol | 38.68 | 39.5 |
| Solyc11g017100.1.1 | Tomato | cytosol | 35.6 | 36.34 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 23.66 | 29.11 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 24.49 | 26.5 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 22.84 | 25.87 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 23.25 | 25.68 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 23.46 | 24.73 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 22.63 | 24.28 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 26.13 | 24.01 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 25.31 | 22.49 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 23.46 | 22.05 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 6.58 | 21.92 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 23.05 | 21.58 |
| TraesCS5B01G143100.1 | Wheat | plastid | 27.57 | 21.0 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 22.22 | 20.89 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 19.96 | 20.46 |
| TraesCS4B01G124000.1 | Wheat | plastid | 27.37 | 19.59 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 22.22 | 19.57 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 24.69 | 19.32 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 27.57 | 18.74 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G320700.1 | EnsemblPlantsGene:TraesCS2B01G320700 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF19 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr2B:-:457335783..457337243
Molecular Weight (calculated)
52019.1 Da
IEP (calculated)
6.434
GRAVY (calculated)
-0.278
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTLSLGVN GGGAAAKKRK VMDGAGDVGV LGAGDGGDRS TVMRLLQARD RMVKVELDHD DGDVSDRGAS PLMRLLLSSA VAGEVGDTHA AAVALQEVYR
101: QASFRGGDPA QRVAAYFADA LASRLLLPPP AKAKTTTTTT TTTREEQFLA FTMFYQASPF YQFAHFTANQ AIVEAFEAGG RRRLHVVDFD VSFGFQWPSL
201: IQSLSDAATT SSSESSQDGS GDCCDEPVSL RITGFGASAD ELRDTEARLA RFADGCPNLR FEFEGVVNNG PEDGRHERIK NDPAATVVVN LVFPAAQNAR
301: PSSWDTRSAL AHIRSLNPSL VFLIDKIDEG SGGKGAGRCG SASLLPQFAA NLRYYAAVFE SLHECLPADS AERIAIERDH LGVEISDAMA SLDRRRHNGD
401: LAADQISRGW KERLESAGFE DARLSSRTVS QAKLLLKMKS GGCGGGGFRV IEAGDGKAMA LGWRDRALIT ASAWRPCRRS VGKNEP
101: QASFRGGDPA QRVAAYFADA LASRLLLPPP AKAKTTTTTT TTTREEQFLA FTMFYQASPF YQFAHFTANQ AIVEAFEAGG RRRLHVVDFD VSFGFQWPSL
201: IQSLSDAATT SSSESSQDGS GDCCDEPVSL RITGFGASAD ELRDTEARLA RFADGCPNLR FEFEGVVNNG PEDGRHERIK NDPAATVVVN LVFPAAQNAR
301: PSSWDTRSAL AHIRSLNPSL VFLIDKIDEG SGGKGAGRCG SASLLPQFAA NLRYYAAVFE SLHECLPADS AERIAIERDH LGVEISDAMA SLDRRRHNGD
401: LAADQISRGW KERLESAGFE DARLSSRTVS QAKLLLKMKS GGCGGGGFRV IEAGDGKAMA LGWRDRALIT ASAWRPCRRS VGKNEP
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.