Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G122000.1 | Wheat | plastid | 98.23 | 98.23 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 89.1 | 98.06 |
| Os11t0124300-01 | Rice | nucleus, plastid | 79.38 | 82.8 |
| TraesCS5B01G143100.1 | Wheat | plastid | 77.61 | 82.6 |
| Os12t0122000-01 | Rice | plastid | 80.12 | 82.42 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 62.89 | 81.02 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 36.38 | 78.16 |
| Zm00001d052380_P001 | Maize | plastid | 75.41 | 76.65 |
| OQU82754 | Sorghum | plastid | 78.06 | 74.54 |
| Zm00001d005029_P001 | Maize | plastid | 74.08 | 74.19 |
| GSMUA_Achr11P... | Banana | plastid | 54.34 | 64.29 |
| CDX78219 | Canola | nucleus, plastid | 52.58 | 59.2 |
| CDX73496 | Canola | nucleus, plastid | 53.46 | 58.36 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 56.41 | 56.99 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 53.31 | 55.44 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 56.55 | 54.31 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 34.32 | 51.89 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 58.03 | 50.38 |
| Solyc10g074680.1.1 | Tomato | cytosol | 56.7 | 46.61 |
| PGSC0003DMT400043358 | Potato | cytosol | 56.41 | 46.37 |
| KRH40615 | Soybean | nucleus, plastid | 53.76 | 44.35 |
| KRH00551 | Soybean | nucleus, plastid | 54.05 | 43.59 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 25.33 | 37.31 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 22.24 | 33.33 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 19.29 | 33.16 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 19.88 | 31.47 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 20.18 | 31.14 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 6.33 | 29.45 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 22.24 | 28.54 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 21.65 | 28.32 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 21.21 | 27.85 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 19.59 | 27.37 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 21.35 | 26.51 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 19.88 | 26.11 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 23.71 | 25.93 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 17.53 | 25.11 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 25.77 | 24.48 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 19.29 | 23.73 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G124000.1 | EnsemblPlantsGene:TraesCS4B01G124000 | InterPro:IPR005202 | InterPro:TF_GRAS | ncoils:Coil | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 |
Description
No Description!
Coordinates
chr4B:+:148920366..148923068
Molecular Weight (calculated)
72320.9 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.142
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSLLLFP SSSSSGPNHS SYSHAHAAAS ASHSALLPPL PSPSPSDLFL YLDQLDHQEG AAAMVRKRPA PDVDLPPPRR HVTGDLSDVT AATGGAAPPQ
101: QLPPAVAGSA QLPALPMQLP AFGSHLQAPV LAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS
201: LLASDLVQHQ PPPPPPLHHP PSLLPGAGGN TMLSAPPVPA LPPPPPPDKR RREEEQPNQP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR
301: DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLI SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV
401: KFSHFTANQA IQEAFEREDR VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP FEFYPVAGKA GNLDPEKLGV
501: DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG
601: GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPVQALGR
101: QLPPAVAGSA QLPALPMQLP AFGSHLQAPV LAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS
201: LLASDLVQHQ PPPPPPLHHP PSLLPGAGGN TMLSAPPVPA LPPPPPPDKR RREEEQPNQP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR
301: DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLI SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV
401: KFSHFTANQA IQEAFEREDR VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP FEFYPVAGKA GNLDPEKLGV
501: DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG
601: GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPVQALGR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.