Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G195900.1 | Wheat | nucleus | 96.11 | 95.72 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 95.5 | 95.11 |
| CDY14910 | Canola | nucleus | 21.27 | 78.2 |
| Os01t0242200-01 | Rice | nucleus | 65.64 | 77.35 |
| CDY72283 | Canola | nucleus | 28.02 | 72.49 |
| Zm00001d039254_P001 | Maize | nucleus | 52.35 | 72.32 |
| Bra036013.1-P | Field mustard | nucleus | 23.31 | 72.15 |
| EES02157 | Sorghum | nucleus | 67.08 | 68.19 |
| CDX89862 | Canola | nucleus | 49.08 | 50.0 |
| Bra015271.1-P | Field mustard | nucleus | 49.28 | 50.0 |
| CDY18188 | Canola | nucleus | 48.67 | 49.69 |
| CDY32514 | Canola | nucleus | 49.28 | 49.18 |
| Bra032541.1-P | Field mustard | nucleus | 49.28 | 49.18 |
| AT5G44160.1 | Thale cress | nucleus | 46.83 | 49.14 |
| CDX94759 | Canola | nucleus | 46.42 | 48.92 |
| AT1G03840.1 | Thale cress | nucleus | 50.51 | 48.81 |
| CDY22307 | Canola | nucleus | 46.22 | 48.71 |
| Bra033724.1-P | Field mustard | nucleus | 46.22 | 48.71 |
| Zm00001d009030_P002 | Maize | nucleus | 43.35 | 47.43 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 40.7 | 46.6 |
| Solyc07g053570.2.1 | Tomato | nucleus | 45.6 | 44.42 |
| PGSC0003DMT400024272 | Potato | nucleus | 44.79 | 44.24 |
| KRH49655 | Soybean | nucleus | 31.7 | 42.82 |
| KRH25657 | Soybean | nucleus | 40.08 | 41.61 |
| KRH55868 | Soybean | nucleus | 39.47 | 40.72 |
| KRH22332 | Soybean | nucleus | 39.26 | 40.51 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 34.56 | 40.43 |
| KRH26995 | Soybean | nucleus | 39.06 | 39.79 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 39.26 | 38.71 |
| TraesCS3A01G205800.1 | Wheat | nucleus | 36.81 | 37.74 |
| TraesCS4A01G041400.1 | Wheat | nucleus | 37.01 | 37.17 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 40.29 | 36.15 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 34.76 | 35.05 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 40.29 | 34.08 |
| TraesCS2A01G289500.1 | Wheat | nucleus | 32.72 | 33.13 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 41.92 | 30.92 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 24.34 | 28.67 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 25.36 | 25.25 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 36.61 | 21.57 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G170700.1 | EnsemblPlantsGene:TraesCS3A01G170700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF26 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr3A:-:178985943..178987522
Molecular Weight (calculated)
52122.6 Da
IEP (calculated)
9.100
GRAVY (calculated)
-0.491
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEAMPNPF APLTNQPQQQ PPSHEHPAAP PPKKKRNLPG TPDPDAEVIA LSPRTLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL RQRSGKEPRK
101: RVYVCPEKSC VHHNPSRALG DLTGIKKHFC RKHGEKKWKC DKCAKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARLTAAT
201: SGAAVAAVPS MCGGGQGYLF ARPNSMMLQP PVAPHLKPAA GGQMLGHAAG AVADSLCDGA VARHGGLSLW GSDNTLPSSM GHHIGGLMSS GGGGAPMPMQ
301: MYADLFAPSS GAPPQFDMAQ LSWLYGNNGG NGKLSSSNAS ELTTNSSREA DSAPSVFSGQ QHAKPAAAPT DMSATALLQR AAQIGSVTSS NTSMPLAGAF
401: EQAPNSAGRI DERSKFDDRA LFGTSQHQHN ANVPSAMSEL TAATANVPYD VFSAARHAGL KDAVGREETR DFLGVGMQAL CSSSMHGWI
101: RVYVCPEKSC VHHNPSRALG DLTGIKKHFC RKHGEKKWKC DKCAKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARLTAAT
201: SGAAVAAVPS MCGGGQGYLF ARPNSMMLQP PVAPHLKPAA GGQMLGHAAG AVADSLCDGA VARHGGLSLW GSDNTLPSSM GHHIGGLMSS GGGGAPMPMQ
301: MYADLFAPSS GAPPQFDMAQ LSWLYGNNGG NGKLSSSNAS ELTTNSSREA DSAPSVFSGQ QHAKPAAAPT DMSATALLQR AAQIGSVTSS NTSMPLAGAF
401: EQAPNSAGRI DERSKFDDRA LFGTSQHQHN ANVPSAMSEL TAATANVPYD VFSAARHAGL KDAVGREETR DFLGVGMQAL CSSSMHGWI
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.