Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G262500.1 | Wheat | nucleus | 95.28 | 88.21 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 95.48 | 88.07 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 93.02 | 84.51 |
| EER95332 | Sorghum | nucleus | 74.74 | 69.33 |
| Zm00001d028139_P001 | Maize | nucleus | 75.36 | 68.09 |
| Os03t0197800-00 | Rice | nucleus | 76.8 | 67.75 |
| AT3G50700.1 | Thale cress | nucleus | 42.71 | 46.02 |
| Bra036098.1-P | Field mustard | nucleus, plastid | 40.86 | 45.64 |
| CDX77936 | Canola | nucleus | 40.66 | 45.41 |
| CDY24490 | Canola | nucleus | 40.45 | 45.29 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 47.02 | 45.26 |
| KRH76829 | Soybean | nucleus | 46.82 | 44.1 |
| CDY67009 | Canola | nucleus | 42.3 | 43.28 |
| CDX81372 | Canola | nucleus | 42.71 | 42.54 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 45.59 | 42.29 |
| AT5G66730.1 | Thale cress | nucleus | 43.33 | 42.2 |
| CDY57128 | Canola | nucleus | 42.51 | 42.07 |
| Bra037151.1-P | Field mustard | nucleus | 42.51 | 42.07 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 50.92 | 41.89 |
| KRH08298 | Soybean | nucleus | 43.12 | 41.1 |
| KRH69941 | Soybean | nucleus, plastid | 44.15 | 40.95 |
| KRH69942 | Soybean | nucleus | 44.15 | 40.95 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 44.97 | 40.33 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 46.41 | 38.9 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 41.07 | 37.04 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 37.17 | 37.01 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 37.58 | 36.9 |
| TraesCS3A01G205800.1 | Wheat | nucleus | 35.73 | 36.48 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 31.01 | 36.12 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 33.06 | 33.2 |
| Solyc02g062940.2.1 | Tomato | nucleus | 44.56 | 33.08 |
| TraesCS2A01G289500.1 | Wheat | nucleus | 32.03 | 32.3 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 35.93 | 32.11 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 37.99 | 32.01 |
| PGSC0003DMT400040064 | Potato | nucleus | 44.76 | 29.62 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 37.58 | 27.6 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 23.0 | 26.99 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 41.89 | 24.58 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 24.64 | 24.44 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G041400.1 | EnsemblPlantsGene:TraesCS4A01G041400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr4A:-:34785557..34787965
Molecular Weight (calculated)
51617.2 Da
IEP (calculated)
8.677
GRAVY (calculated)
-0.497
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEVRK RVYVCPEPSC VHHDASRALG DLTGIKKHFC RKHGEKKWKC
101: DKCSKKYAVQ SDWKAHAKTC GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARAPP AEDGSSGAAA PPALPPPPAA PVPLQQLPPA PAPQQHEEPE
201: REIGAAAPEP VVQYTPPAPL MPSPPSVNGA NVSASTSSVA ATSQSLLGSM FAPSSVAQAP QYPERALAAK PPSLCLATDA ASAQFSAPAA DRQQQQLPPP
301: SPSPSAHMSA TALLQKAAQM GATSSSSSFL RGLGLDISSS SPASTSSGQH HHHHHHHHHQ EAMQMQFPEG SLQQWPPRLE PEPAPMMSAG LGLGLPYDST
401: GGPMGLPELM MGQSSLFSAK PATLDFLGLG MSPTGATTSR GLPVFMQPMG GAVGMARSGT GPPDTFGAGR GAQGKPWERN PSSSPIL
101: DKCSKKYAVQ SDWKAHAKTC GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARAPP AEDGSSGAAA PPALPPPPAA PVPLQQLPPA PAPQQHEEPE
201: REIGAAAPEP VVQYTPPAPL MPSPPSVNGA NVSASTSSVA ATSQSLLGSM FAPSSVAQAP QYPERALAAK PPSLCLATDA ASAQFSAPAA DRQQQQLPPP
301: SPSPSAHMSA TALLQKAAQM GATSSSSSFL RGLGLDISSS SPASTSSGQH HHHHHHHHHQ EAMQMQFPEG SLQQWPPRLE PEPAPMMSAG LGLGLPYDST
401: GGPMGLPELM MGQSSLFSAK PATLDFLGLG MSPTGATTSR GLPVFMQPMG GAVGMARSGT GPPDTFGAGR GAQGKPWERN PSSSPIL
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.