Factsheet for VIT_04s0023g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76829	Soybean	nucleus	77.27	75.63
KRH08298	Soybean	nucleus	68.97	68.3
KRH69942	Soybean	nucleus	69.76	67.24
KRH69941	Soybean	nucleus, plastid	69.76	67.24
AT5G66730.1	Thale cress	nucleus	62.06	62.8
CDY24490	Canola	nucleus	53.56	62.3
Bra036098.1-P	Field mustard	nucleus, plastid	53.56	62.16
CDX77936	Canola	nucleus	53.56	62.16
PGSC0003DMT400033039	Potato	nucleus, plastid	64.43	62.1
AT3G50700.1	Thale cress	nucleus	55.34	61.95
CDY67009	Canola	nucleus	57.11	60.71
CDX81372	Canola	nucleus	58.1	60.12
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	58.1	59.27
CDY57128	Canola	nucleus	57.51	59.15
Bra037151.1-P	Field mustard	nucleus	57.51	59.15
GSMUA_Achr4P14030_001	Banana	nucleus	55.34	51.57
GSMUA_Achr3P29940_001	Banana	nucleus	56.92	49.57
GSMUA_Achr7P25960_001	Banana	nucleus	57.31	48.99
EER95332	Sorghum	nucleus	50.0	48.19
TraesCS4B01G262400.1	Wheat	nucleus	50.0	47.92
Solyc02g062940.2.1	Tomato	nucleus	62.06	47.87
TraesCS4D01G262500.1	Wheat	nucleus	49.21	47.34
Zm00001d028139_P001	Maize	nucleus	50.2	47.12
TraesCS4A01G041400.1	Wheat	nucleus	45.26	47.02
VIT_12s0028g03030.t01	Wine grape	nucleus	39.33	46.6
HORVU4Hr1G070950.8	Barley	nucleus	49.01	46.27
Os03t0197800-00	Rice	nucleus	50.2	46.01
GSMUA_Achr4P07200_001	Banana	nucleus	49.01	45.93
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	38.14	43.57
PGSC0003DMT400040064	Potato	nucleus	62.06	42.66
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	42.69	40.68
VIT_06s0004g03070.t01	Wine grape	nucleus	39.92	40.48
VIT_08s0040g02100.t01	Wine grape	nucleus	39.13	40.24
VIT_09s0002g02300.t01	Wine grape	nucleus	40.91	38.91
VIT_09s0054g01820.t01	Wine grape	nucleus	30.24	38.83
VIT_04s0008g01160.t01	Wine grape	nucleus	39.13	37.64
VIT_01s0010g02100.t01	Wine grape	nucleus	40.32	35.66
VIT_07s0104g01620.t01	Wine grape	nucleus	41.3	34.95
VIT_01s0011g06400.t01	Wine grape	nucleus	26.88	32.0
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	41.3	31.62
VIT_17s0000g01870.t01	Wine grape	nucleus	26.88	29.89

Protein Annotations

EntrezGene:100263342	wikigene:100263342	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB44469	ProteinID:CCB44469.1
UniProt:F6GWY3	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100263342	wikigene:LOC100263342	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF20	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC55200	TIGR:TC69732	UniParc:UPI000198318B
ArrayExpress:VIT_04s0023g01430	EnsemblPlantsGene:VIT_04s0023g01430	EnsemblPlants:VIT_04s0023g01430.t01	RefSeq:XP_002271958	RefSeq:XP_002271958.2	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:17933799..17936757

Molecular Weight (calculated)

53127.7 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.452

Length

506 amino acids

Sequence
(BLAST)

001: MPVDLDNSSA MTVSTASGEA SVSSTGNQPA PPKPAPKKKR NLPGMPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK
101: EVRKRVYVCP EPSCVHHEPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR DSFITHRAFC DALAEESAKT
201: QTQTAVANPN SDEDPKIESP PPPPPPPPPP APAVAPSTAV ISAVLPIQSP ELPENPTQIL EEAPPAATGL NASCSSSTSS SSNGTTSSSA FASLFVSSTA
301: SASLQQPQAT GFSGLSRVMT RPDRPTELTP SSSTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL RGFGIVSSTS
401: SSGQQENLQW NRQQMEPEST SVAAGLGLGL PCDEGSGLKE LMMGTPSLFG PKQTTLDLLG LGMAASGSPS GGLSALITSI GGGLDVAAAA ATYRGGEFAG
501: KDMGRG

Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)

001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS

Arabidopsis Description

IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.