Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069240.1.1 | Tomato | nucleus | 51.9 | 57.68 |
| PGSC0003DMT400020945 | Potato | nucleus | 55.51 | 55.29 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 38.88 | 45.43 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 42.08 | 42.68 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 36.87 | 41.53 |
| VIT_18s0001g12220.t01 | Wine grape | nucleus, plastid | 40.48 | 40.73 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 40.48 | 39.92 |
| KRH24905 | Soybean | nucleus | 40.88 | 37.71 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 39.28 | 36.84 |
| KRG89014 | Soybean | nucleus | 42.08 | 36.59 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 41.68 | 36.36 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 38.68 | 36.35 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 28.46 | 36.04 |
| VIT_04s0008g01160.t01 | Wine grape | nucleus | 37.88 | 35.93 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 37.88 | 31.61 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 41.48 | 31.32 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 24.25 | 28.47 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 22.85 | 25.05 |
Protein Annotations
| EntrezGene:100248459 | wikigene:100248459 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CCB43659 | ProteinID:CCB43659.1 |
| UniProt:F6GTZ5 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013087 | InterPro:JKD-like | EntrezGene:LOC100248459 | wikigene:LOC100248459 | PFAM:PF12171 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF42 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000210A8DD |
| ArrayExpress:VIT_06s0004g03070 | EnsemblPlantsGene:VIT_06s0004g03070 | EnsemblPlants:VIT_06s0004g03070.t01 | RefSeq:XP_002282251 | RefSeq:XP_002282251.2 | InterPro:Znf_C2H2_jaz |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:-:3815583..3818141
Molecular Weight (calculated)
54948.7 Da
IEP (calculated)
9.532
GRAVY (calculated)
-0.644
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDGLTLPS SIRGFVQEPN SNPNPNPSAN PVKKKRNLPG TPDPEAEVIA LSPKSLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSKEVRK
101: KVYICPEKSC VHHNPTRALG DLTGIKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARLTSVS
201: APNPIFRNEL MNGSISNPQA HIIPQFSSVF RPEFVGSEQL VGHLNADGQK PRLPLWLDHA NSHLNNPIGV NTNGSFLAPT SAGLPEMVQT APMSMYGSPA
301: SSQNQWLQRC SEASFTSSTL PRVLKEEEEN KGNLSESITS LFSSNQNQQE SSAHMSATAL LQKAAQMGST KSNSAFFSTT GFGSINSSLS NTTPFSSYPH
401: GRSNNQVHKF LIRQSNQSDS MNQLINSTSP SSTMGDGLLM GDMNSTPLFH ASSNEVERGL TRDFLGVGSD ASRPFLQQEL AKFASMGSAM GMSQYSGNH
101: KVYICPEKSC VHHNPTRALG DLTGIKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARLTSVS
201: APNPIFRNEL MNGSISNPQA HIIPQFSSVF RPEFVGSEQL VGHLNADGQK PRLPLWLDHA NSHLNNPIGV NTNGSFLAPT SAGLPEMVQT APMSMYGSPA
301: SSQNQWLQRC SEASFTSSTL PRVLKEEEEN KGNLSESITS LFSSNQNQQE SSAHMSATAL LQKAAQMGST KSNSAFFSTT GFGSINSSLS NTTPFSSYPH
401: GRSNNQVHKF LIRQSNQSDS MNQLINSTSP SSTMGDGLLM GDMNSTPLFH ASSNEVERGL TRDFLGVGSD ASRPFLQQEL AKFASMGSAM GMSQYSGNH
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.