Factsheet for VIT_01s0010g02100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09390	Canola	nucleus	19.06	91.6
CDY04118	Canola	nucleus	19.06	91.6
KRG89168	Soybean	nucleus, plastid	43.71	71.84
CDY53540	Canola	nucleus	23.78	70.1
CDY04117	Canola	nucleus	25.7	68.69
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	39.86	62.64
KRG90705	Soybean	nucleus	60.49	61.02
KRH36039	Soybean	nucleus	60.49	60.6
KRH49489	Soybean	nucleus, plastid	56.12	60.23
GSMUA_Achr9P23870_001	Banana	nucleus	42.83	56.45
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	48.25	56.33
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	38.29	55.03
KRH49485	Soybean	nucleus	51.75	54.51
GSMUA_Achr4P04310_001	Banana	nucleus	44.93	54.33
GSMUA_Achr1P07110_001	Banana	nucleus	45.98	54.12
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.15	53.99
KRG91985	Soybean	nucleus	52.27	53.39
KRG89167	Soybean	nucleus, plastid	51.22	53.37
KRH34792	Soybean	nucleus	51.75	53.33
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	61.01	52.8
GSMUA_Achr3P13990_001	Banana	nucleus	38.29	51.41
GSMUA_Achr10P...	Banana	nucleus	43.01	51.36
GSMUA_Achr1P02080_001	Banana	nucleus	48.08	50.27
Os09t0555700-02	Rice	nucleus	46.15	49.35
GSMUA_Achr1P17940_001	Banana	nucleus	39.86	48.82
Zm00001d021403_P001	Maize	nucleus	40.56	47.93
TraesCS5B01G358600.1	Wheat	nucleus, plastid	45.1	47.25
TraesCS5A01G356100.1	Wheat	nucleus, plastid	44.93	47.16
OQU89911	Sorghum	nucleus, plastid	43.88	47.09
TraesCS5D01G364900.1	Wheat	nucleus, plastid	44.76	46.8
PGSC0003DMT400075837	Potato	nucleus	42.13	46.53
VIT_12s0028g03030.t01	Wine grape	nucleus	34.27	45.9
Solyc04g008500.2.1	Tomato	nucleus	41.26	45.65
GSMUA_Achr4P05240_001	Banana	nucleus	39.34	45.0
KXG25416	Sorghum	nucleus	42.48	43.94
CDY45271	Canola	nucleus	31.47	43.27
GSMUA_Achr11P...	Banana	nucleus	39.86	42.78
CDY45270	Canola	nucleus	33.57	42.67
Bra026204.1-P	Field mustard	nucleus, plastid	33.57	42.67
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	33.04	42.66
CDY59418	Canola	nucleus	30.59	42.37
TraesCS6A01G254500.1	Wheat	nucleus	42.66	42.21
TraesCS6B01G271000.1	Wheat	nucleus	42.48	42.19
Os08t0554400-02	Rice	nucleus	40.38	42.15
VIT_08s0040g02100.t01	Wine grape	nucleus	36.01	41.87
TraesCS6D01G235800.1	Wheat	nucleus	42.31	41.87
CDY17615	Canola	nucleus	38.46	41.75
VIT_06s0004g03070.t01	Wine grape	nucleus	36.36	41.68
CDY03081	Canola	nucleus	38.11	41.6
EES11271	Sorghum	nucleus	43.53	41.57
GSMUA_Achr11P...	Banana	nucleus	37.06	41.49
Zm00001d026113_P006	Maize	nucleus	43.36	41.4
VIT_09s0002g02300.t01	Wine grape	nucleus	38.29	41.17
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	35.66	41.13
Zm00001d017560_P001	Maize	nucleus	41.78	41.07
CDY17440	Canola	nucleus	34.27	41.0
GSMUA_Achr11P...	Banana	nucleus	40.56	40.99
TraesCS2B01G421100.1	Wheat	nucleus	43.71	40.85
KXG31026	Sorghum	nucleus	42.31	40.67
CDY09391	Canola	nucleus	40.21	40.56
CDY15811	Canola	nucleus	40.21	40.49
Os04t0566400-02	Rice	nucleus	43.36	40.46
VIT_04s0023g01430.t01	Wine grape	nucleus	35.66	40.32
CDY15814	Canola	nucleus	33.04	39.96
AT2G02080.3	Thale cress	nucleus, plastid	36.01	39.92
AT1G14580.3	Thale cress	nucleus	33.57	39.92
Bra024834.1-P	Field mustard	nucleus, plastid	38.46	39.86
Bra026203.1-P	Field mustard	nucleus, plastid	32.17	39.66
Bra026819.1-P	Field mustard	nucleus	32.34	39.61
CDX81653	Canola	nucleus	32.34	39.61
VIT_04s0008g01160.t01	Wine grape	nucleus	36.36	39.54
Bra026616.1-P	Field mustard	nucleus	35.31	39.53
Bra024833.1-P	Field mustard	plastid	35.31	39.38
CDY17614	Canola	nucleus, plastid	35.31	39.38
Zm00001d031992_P001	Maize	nucleus	41.61	39.34
Bra026617.1-P	Field mustard	nucleus	40.38	39.15
Zm00001d002654_P003	Maize	nucleus	43.18	39.02
Os02t0672100-01	Rice	nucleus	41.78	38.86
CDY03080	Canola	nucleus, plastid	34.97	38.76
Bra040974.1-P	Field mustard	nucleus, plastid	39.34	38.46
KXG36163	Sorghum	nucleus	38.99	38.32
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	35.49	38.23
Bra023223.1-P	Field mustard	plastid	31.99	38.12
VIT_09s0054g01820.t01	Wine grape	nucleus	26.22	38.07
TraesCS2D01G400300.2	Wheat	nucleus	43.88	37.92
AT2G02070.2	Thale cress	nucleus	39.86	37.87
Zm00001d006319_P001	Maize	nucleus	36.89	37.75
TraesCS2A01G403200.2	Wheat	nucleus	43.71	37.71
CDY12268	Canola	nucleus	28.67	36.77
CDY68983	Canola	nucleus	24.48	35.81
VIT_07s0104g01620.t01	Wine grape	nucleus	37.41	35.79
VIT_01s0011g06400.t01	Wine grape	nucleus	22.9	30.82
VIT_17s0000g01870.t01	Wine grape	nucleus	21.68	27.25

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB51220	ProteinID:CCB51220.1	UniProt:F6HG27	EMBL:FN595754
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	PFAM:PF12171
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00021098BD	ArrayExpress:VIT_01s0010g02100	EnsemblPlantsGene:VIT_01s0010g02100	EnsemblPlants:VIT_01s0010g02100.t01	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:19042635..19047780

Molecular Weight (calculated)

61610.0 Da

IEP (calculated)

9.278

GRAVY (calculated)

-0.593

Length

572 amino acids

Sequence
(BLAST)

001: MAASSTPAQL FGIREEEQNQ VKQQHSAVPS SSNAPAAAPP KKKRNQPGTP SNLFFFSYGL AFSMTDPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL
101: QLHRRGHNLP WKLKQKTTKE VRRKVYLCPE PGCVHHDPAR ALGDLTGIKK HYSRKHGEKK WKCEKCSKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD
201: SFITHRAFCD ALAQESARHP TPMSTIGSHL YGSSNMGLGL SQVGPQISSM PDQSHQPGDM LRLGGARAGQ FDHLIPPAIG SSSFRTPQPM PSQAFYIPEP
301: NQEFHEDQQS QHGGLLTNKP FHGLVHLPDL QNNTNNPSSA ANLFNLSFFS NSSNTNSMLS NTNNANNSTN MPSSGLLISD QFNTVNGGSG SERNNLFPSN
401: IIGDQISSGV PSLFSTSLQN ENAVSHMSAT ALLQKAAQMG STSSNNSASL LRGFAGSSSA NAKSDRPLVG PNFGGVFGEN ESHLQDLMNS LGGGSSSIFG
501: GGSGGLHQNL TANMGGSDRL TRDFLGVGQM VRTISGGFSQ RDLPPPGINI STLDSERSSA QTSQAFGGGN FQ

Best Arabidopsis Sequence Match ( AT2G02070.1 )
(BLAST)

001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF

Arabidopsis Description

IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.