Factsheet for GSMUA_Achr4P11810_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04118	Canola	nucleus	21.63	89.08
CDY09390	Canola	nucleus	21.22	87.39
GSMUA_Achr9P23870_001	Banana	nucleus	60.2	67.97
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	49.18	66.21
CDY53540	Canola	nucleus	25.1	63.4
GSMUA_Achr4P04310_001	Banana	nucleus	60.61	62.79
CDY04117	Canola	nucleus	26.33	60.28
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	58.78	58.9
GSMUA_Achr1P07110_001	Banana	nucleus	56.33	56.79
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	46.12	56.78
KRG89168	Soybean	nucleus, plastid	40.0	56.32
GSMUA_Achr10P...	Banana	nucleus	54.49	55.74
KRG91985	Soybean	nucleus	56.73	49.64
GSMUA_Achr3P13990_001	Banana	nucleus	42.86	49.3
GSMUA_Achr7P14780_001	Banana	nucleus	35.71	49.02
KRH34792	Soybean	nucleus	55.31	48.83
GSMUA_Achr3P25410_001	Banana	nucleus	32.45	48.77
GSMUA_Achr1P02080_001	Banana	nucleus	54.08	48.45
VIT_01s0010g02100.t01	Wine grape	nucleus	56.33	48.25
KRH49485	Soybean	nucleus	52.86	47.7
GSMUA_Achr2P16690_001	Banana	nucleus	35.51	47.28
KRG89167	Soybean	nucleus, plastid	52.65	46.99
GSMUA_Achr2P08460_001	Banana	nucleus	30.2	46.98
KRG90705	Soybean	nucleus	54.29	46.91
GSMUA_Achr1P17940_001	Banana	nucleus	44.49	46.68
KRH36039	Soybean	nucleus	53.67	46.06
GSMUA_Achr7P13540_001	Banana	nucleus	34.08	45.75
KRH49489	Soybean	nucleus, plastid	49.39	45.4
GSMUA_Achr5P22140_001	Banana	nucleus	35.1	45.14
GSMUA_Achr2P08910_001	Banana	nucleus	35.1	44.68
GSMUA_Achr10P...	Banana	nucleus	34.29	44.56
GSMUA_Achr4P05240_001	Banana	nucleus	45.31	44.4
GSMUA_Achr7P09150_001	Banana	nucleus	36.94	44.15
GSMUA_Achr9P06650_001	Banana	nucleus	33.06	44.14
GSMUA_Achr6P27030_001	Banana	nucleus	31.84	44.07
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	57.55	42.66
Os09t0555700-02	Rice	nucleus	46.33	42.43
PGSC0003DMT400075837	Potato	nucleus	44.49	42.08
GSMUA_Achr10P...	Banana	nucleus	38.37	41.87
TraesCS5B01G358600.1	Wheat	nucleus, plastid	46.53	41.76
TraesCS5D01G364900.1	Wheat	nucleus, plastid	46.53	41.68
TraesCS5A01G356100.1	Wheat	nucleus, plastid	46.33	41.65
Solyc04g008500.2.1	Tomato	nucleus	43.88	41.59
CDY59418	Canola	nucleus	33.88	40.19
GSMUA_Achr11P...	Banana	nucleus	43.06	39.59
GSMUA_Achr7P22720_001	Banana	mitochondrion	22.65	39.5
GSMUA_Achr11P...	Banana	nucleus	45.51	39.4
CDY45271	Canola	nucleus	33.06	38.94
GSMUA_Achr8P10040_001	Banana	nucleus	35.51	38.93
CDY17440	Canola	nucleus	37.55	38.49
GSMUA_Achr5P06450_001	Banana	nucleus	36.73	37.82
GSMUA_Achr11P...	Banana	nucleus	39.39	37.77
Bra026204.1-P	Field mustard	nucleus, plastid	33.88	36.89
CDY45270	Canola	nucleus	33.88	36.89
GSMUA_Achr11P...	Banana	nucleus	30.41	35.99
Bra026819.1-P	Field mustard	nucleus	34.29	35.97
CDY15814	Canola	nucleus	34.69	35.94
CDX81653	Canola	nucleus	34.08	35.76
CDY03081	Canola	nucleus	37.96	35.5
CDY17615	Canola	nucleus	38.16	35.48
CDY17614	Canola	nucleus, plastid	37.14	35.48
Bra026203.1-P	Field mustard	nucleus, plastid	33.47	35.34
AT2G02080.3	Thale cress	nucleus, plastid	37.14	35.27
Bra023223.1-P	Field mustard	plastid	34.49	35.21
Bra024833.1-P	Field mustard	plastid	36.73	35.09
Bra026616.1-P	Field mustard	nucleus	36.53	35.03
CDY03080	Canola	nucleus, plastid	36.53	34.69
CDY15811	Canola	nucleus	40.0	34.51
CDY09391	Canola	nucleus	39.8	34.39
AT1G14580.3	Thale cress	nucleus	33.67	34.3
Bra024834.1-P	Field mustard	nucleus, plastid	38.16	33.88
CDY12268	Canola	nucleus	30.82	33.86
CDY68983	Canola	nucleus	26.73	33.5
GSMUA_Achr7P24170_001	Banana	nucleus	34.29	33.47
Bra026617.1-P	Field mustard	nucleus	39.8	33.05
GSMUA_Achr4P14030_001	Banana	nucleus	36.33	32.78
Bra040974.1-P	Field mustard	nucleus, plastid	38.78	32.48
GSMUA_Achr4P07200_001	Banana	nucleus	35.31	32.04
AT2G02070.2	Thale cress	nucleus	39.18	31.89
GSMUA_Achr3P29940_001	Banana	nucleus	37.55	31.67
GSMUA_Achr7P25960_001	Banana	nucleus	37.96	31.42
GSMUA_Achr7P18610_001	Banana	nucleus	22.65	29.37
GSMUA_Achr6P02490_001	Banana	nucleus	21.84	28.92
GSMUA_Achr10P...	Banana	nucleus	22.45	28.72
GSMUA_Achr5P23130_001	Banana	nucleus	22.24	28.68
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	21.02	26.89
GSMUA_Achr3P20220_001	Banana	nucleus	23.06	26.65
GSMUA_Achr10P...	Banana	nucleus	21.43	26.32
GSMUA_AchrUn_...	Banana	nucleus	35.51	19.57

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11810_001	EnsemblPlants:GSMUA_Achr4T11810_001	EnsemblPlantsGene:GSMUA_Achr4G11810_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029519BD	UniProt:M0SN46	MapMan:15.5.15	:

Description

Putative ZOS9-17 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G11810_001]

Coordinates

chr4:-:8604250..8607098

Molecular Weight (calculated)

53889.4 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.620

Length

490 amino acids

Sequence
(BLAST)

001: MATASSHHHR RRRRQLLLPR KRGTSREIQA NPDAEVVALS PKTLLATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNPKEVRRRV YICPEPTCVH
101: YEPSRALGDL TGIKKHYCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARIPAGINT IGGSHFYGNT
201: GIHLGLPQLN SQLSSLQEQT HCGNDSAAPF NHVTLPSFRP PQSATPFFLG SGSSQDIHED TQLLQSKPFH GLMQLQDHLQ HNTNASSSSS AAAATDLFNL
301: SIFSNRNHLI SNHMDANMFD QSVTTESVPP HMSATALLQK AAQMGATSSC SSASSLLRGI GSLYSSNSKN AGFQASATQV ENESHFQDLM NSLTNGNTST
401: FNGGNHQKTG FSGFISGIGN MNESKLQRNL SASGLGTSDS LTRDFLGVGS MMRRGGITQR EQHLGIDISS LDPELKSGSS TRSFVGGSLQ

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.