Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14910 | Canola | nucleus | 24.86 | 66.17 |
| Bra036013.1-P | Field mustard | nucleus | 26.55 | 59.49 |
| CDY72283 | Canola | nucleus | 31.36 | 58.73 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 48.31 | 46.59 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 46.61 | 46.22 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 39.27 | 42.64 |
| GSMUA_Achr2P08460_001 | Banana | nucleus | 37.29 | 41.9 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 41.81 | 40.66 |
| GSMUA_Achr2P16690_001 | Banana | nucleus | 41.81 | 40.22 |
| GSMUA_Achr10P... | Banana | nucleus | 42.66 | 40.05 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 48.02 | 39.81 |
| GSMUA_Achr7P13540_001 | Banana | nucleus | 40.4 | 39.18 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 42.37 | 38.96 |
| GSMUA_Achr5P22140_001 | Banana | nucleus | 40.96 | 38.06 |
| GSMUA_Achr7P09150_001 | Banana | nucleus | 42.94 | 37.07 |
| KRH49655 | Soybean | nucleus | 37.57 | 36.74 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 40.96 | 36.43 |
| KRH22332 | Soybean | nucleus | 48.31 | 36.08 |
| KRH25657 | Soybean | nucleus | 47.18 | 35.46 |
| KRH55868 | Soybean | nucleus | 47.46 | 35.44 |
| CDY18188 | Canola | nucleus | 47.74 | 35.28 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 42.37 | 35.21 |
| KRH26995 | Soybean | nucleus | 47.46 | 35.0 |
| Bra015271.1-P | Field mustard | nucleus | 47.18 | 34.65 |
| CDX89862 | Canola | nucleus | 46.89 | 34.58 |
| GSMUA_Achr10P... | Banana | nucleus | 43.79 | 34.52 |
| PGSC0003DMT400024272 | Potato | nucleus | 47.74 | 34.14 |
| AT5G44160.1 | Thale cress | nucleus | 44.92 | 34.12 |
| GSMUA_Achr8P10040_001 | Banana | nucleus | 42.66 | 33.78 |
| Bra032541.1-P | Field mustard | nucleus | 46.61 | 33.67 |
| CDY32514 | Canola | nucleus | 46.61 | 33.67 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 41.24 | 33.64 |
| CDX94759 | Canola | nucleus | 44.07 | 33.62 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 46.33 | 33.54 |
| Solyc07g053570.2.1 | Tomato | nucleus | 47.46 | 33.47 |
| Bra033724.1-P | Field mustard | nucleus | 43.79 | 33.41 |
| AT1G03840.1 | Thale cress | nucleus | 47.74 | 33.4 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 43.79 | 33.19 |
| CDY22307 | Canola | nucleus | 43.5 | 33.19 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 26.27 | 33.1 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 45.2 | 32.92 |
| GSMUA_Achr11P... | Banana | nucleus | 38.42 | 32.85 |
| GSMUA_Achr10P... | Banana | nucleus | 44.35 | 32.78 |
| GSMUA_Achr11P... | Banana | nucleus | 49.15 | 32.65 |
| GSMUA_Achr5P06450_001 | Banana | nucleus | 43.5 | 32.35 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 43.22 | 32.35 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 44.07 | 31.84 |
| GSMUA_Achr11P... | Banana | nucleus | 43.5 | 30.14 |
| GSMUA_Achr7P24170_001 | Banana | nucleus | 42.66 | 30.08 |
| GSMUA_Achr4P05240_001 | Banana | nucleus | 42.37 | 30.0 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 45.2 | 29.47 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 44.35 | 28.7 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 42.94 | 28.15 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 46.89 | 28.04 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 45.2 | 27.54 |
| GSMUA_Achr11P... | Banana | nucleus | 42.09 | 26.33 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 27.97 | 26.19 |
| GSMUA_Achr10P... | Banana | nucleus | 27.68 | 25.59 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 27.12 | 25.26 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 26.55 | 24.54 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 29.38 | 24.53 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 25.42 | 24.32 |
| GSMUA_Achr10P... | Banana | nucleus | 25.99 | 23.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.81 | 16.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P27030_001 | EnsemblPlants:GSMUA_Achr6T27030_001 | EnsemblPlantsGene:GSMUA_Achr6G27030_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF26 |
| PFscan:PS50157 | ScanProsite:PS00028 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029522CA | UniProt:M0TAJ8 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Putative Zinc finger protein MAGPIE [Source:GMGC_GENE;Acc:GSMUA_Achr6G27030_001]
Coordinates
chr6:+:27643243..27644641
Molecular Weight (calculated)
39854.3 Da
IEP (calculated)
9.293
GRAVY (calculated)
-0.688
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRTSK EPRKRVYVCP EKTCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSRC YAVQSDWKAH
101: SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETARV AASHMSSRNF PSFLKPPVVE GEMVDEARSG LSLLMGQAPP LETLTKADDP FASQLSWIYQ
201: NKLVPWGSDE LISSITLPMS GMKETEDPYS LLLSAPYHYS TQHHHHLVPP APDTSATALL KRAAQIGVTA SRPTSEAKSP DSNIRNLNTN RSYSATHPGN
301: AMENAADPLR MMYSTRHHAA QKDEGPEGET RDFLGVDAPT IRASSLSGWI RIRN
101: SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETARV AASHMSSRNF PSFLKPPVVE GEMVDEARSG LSLLMGQAPP LETLTKADDP FASQLSWIYQ
201: NKLVPWGSDE LISSITLPMS GMKETEDPYS LLLSAPYHYS TQHHHHLVPP APDTSATALL KRAAQIGVTA SRPTSEAKSP DSNIRNLNTN RSYSATHPGN
301: AMENAADPLR MMYSTRHHAA QKDEGPEGET RDFLGVDAPT IRASSLSGWI RIRN
001: MLMMIHLDPE AEVIALSPTT LMATNRFLCE VCGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKRVYVC PEKTCVHHHS SRALGDLTGI KKHFCRKHGE
101: KKWTCEKCAK RYAVQSDWKA HSKTCGTREY RCDCGTIFSR RDSFITHRAF CDALAEETAK INAVSHLNGL AAAGAPGSVN LNYQYLMGTF IPPLQPFVPQ
201: PQTNPNHHHQ HFQPPTSSSL SLWMGQDIAP PQPQPDYDWV FGNAKAASAC IDNNNTHDEQ ITQNANASLT TTTTLSAPSL FSSDQPQNAN ANSNVNMSAT
301: ALLQKAAEIG ATSTTTAATN DPSTFLQSFP LKSTDQTTSY DSGEKFFALF GSNNNIGLMS RSHDHQEIEN ARNDVTVASA LDELQNYPWK RRRVDGGGEV
401: GGGGQTRDFL GVGVQTLCHP SSINGWI
101: KKWTCEKCAK RYAVQSDWKA HSKTCGTREY RCDCGTIFSR RDSFITHRAF CDALAEETAK INAVSHLNGL AAAGAPGSVN LNYQYLMGTF IPPLQPFVPQ
201: PQTNPNHHHQ HFQPPTSSSL SLWMGQDIAP PQPQPDYDWV FGNAKAASAC IDNNNTHDEQ ITQNANASLT TTTTLSAPSL FSSDQPQNAN ANSNVNMSAT
301: ALLQKAAEIG ATSTTTAATN DPSTFLQSFP LKSTDQTTSY DSGEKFFALF GSNNNIGLMS RSHDHQEIEN ARNDVTVASA LDELQNYPWK RRRVDGGGEV
401: GGGGQTRDFL GVGVQTLCHP SSINGWI
Arabidopsis Description
NUCZinc finger protein NUTCRACKER [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.