Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72283 | Canola | nucleus | 33.79 | 90.48 |
| Bra015271.1-P | Field mustard | nucleus | 82.61 | 86.72 |
| CDX89862 | Canola | nucleus | 82.21 | 86.67 |
| CDY18188 | Canola | nucleus | 82.02 | 86.64 |
| CDY32514 | Canola | nucleus | 81.62 | 84.29 |
| Bra032541.1-P | Field mustard | nucleus | 81.62 | 84.29 |
| AT5G44160.1 | Thale cress | nucleus | 63.04 | 68.45 |
| Zm00001d039254_P001 | Maize | nucleus | 40.32 | 57.63 |
| Os01t0242200-01 | Rice | nucleus | 46.64 | 56.87 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 39.72 | 56.3 |
| PGSC0003DMT400024272 | Potato | nucleus | 52.17 | 53.33 |
| Solyc07g053570.2.1 | Tomato | nucleus | 52.37 | 52.79 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 49.41 | 50.92 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 48.81 | 50.51 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 48.62 | 50.1 |
| EES02157 | Sorghum | nucleus | 47.43 | 49.9 |
| GSMUA_Achr10P... | Banana | nucleus | 37.15 | 49.87 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 36.17 | 49.86 |
| GSMUA_Achr6P27030_001 | Banana | nucleus | 33.4 | 47.74 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 40.12 | 47.54 |
| KRH22332 | Soybean | nucleus | 40.71 | 43.46 |
| Zm00001d009030_P002 | Maize | nucleus | 38.14 | 43.18 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 34.19 | 42.82 |
| AT3G50700.1 | Thale cress | nucleus | 38.14 | 42.7 |
| KRH26995 | Soybean | nucleus | 40.32 | 42.5 |
| AT1G55110.2 | Thale cress | nucleus | 37.15 | 41.32 |
| AT3G45260.1 | Thale cress | nucleus | 36.17 | 41.03 |
| AT5G66730.1 | Thale cress | nucleus | 37.75 | 38.2 |
| AT5G60470.2 | Thale cress | nucleus | 34.19 | 37.69 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 37.94 | 37.21 |
| AT5G03150.1 | Thale cress | nucleus | 36.96 | 37.18 |
| AT3G13810.2 | Thale cress | nucleus | 37.35 | 36.77 |
| AT2G02070.2 | Thale cress | nucleus | 43.28 | 36.38 |
| AT1G14580.3 | Thale cress | nucleus | 34.19 | 35.97 |
| AT1G25250.3 | Thale cress | nucleus | 22.13 | 29.09 |
| AT1G68130.1 | Thale cress | nucleus | 22.13 | 26.73 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 33.2 | 26.5 |
| AT2G01940.3 | Thale cress | nucleus | 22.53 | 25.56 |
| Zm00001d006682_P001 | Maize | nucleus | 35.18 | 23.99 |
| EER97442 | Sorghum | nucleus | 35.57 | 22.96 |
| Zm00001d021932_P001 | Maize | nucleus | 35.57 | 22.09 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 34.98 | 22.07 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 34.98 | 21.33 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 34.78 | 20.83 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 29.84 | 17.4 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:839396 | UniProt:A0A178W8W7 | ProteinID:AAD10684.1 | EMBL:AB493428 |
| ProteinID:AEE27620.1 | ProteinID:AEE27621.1 | EMBL:AJ630476 | EMBL:AK227837 | ArrayExpress:AT1G03840 | EnsemblPlantsGene:AT1G03840 |
| RefSeq:AT1G03840 | TAIR:AT1G03840 | RefSeq:AT1G03840-TAIR-G | EnsemblPlants:AT1G03840.1 | TAIR:AT1G03840.1 | EMBL:AY568648 |
| EMBL:BT006209 | UniProt:C0SUS5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0044212 | GO:GO:0046872 | InterPro:IPR013087 | Symbol:MGP |
| RefSeq:NP_001030951.1 | RefSeq:NP_171880.1 | ProteinID:OAP14616.1 | PFAM:PF00096 | PO:PO:0000039 | PO:PO:0000045 |
| PO:PO:0000060 | PO:PO:0000084 | PO:PO:0006081 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009030 | PO:PO:0020124 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF26 |
| UniProt:Q9ZWA6 | SUPFAM:SSF57667 | UniParc:UPI00000A5CD7 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
Coordinates
chr1:-:967470..970334
Molecular Weight (calculated)
55829.2 Da
IEP (calculated)
8.444
GRAVY (calculated)
-0.663
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.