Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017432.1-P | Field mustard | nucleus | 87.44 | 88.64 |
| Bra026624.1-P | Field mustard | nucleus | 86.77 | 88.36 |
| CDY63960 | Canola | nucleus | 89.24 | 88.25 |
| CDY04102 | Canola | nucleus | 88.79 | 88.2 |
| CDY09400 | Canola | nucleus | 86.55 | 88.13 |
| CDY15800 | Canola | nucleus | 86.77 | 87.56 |
| CDY17620 | Canola | nucleus | 85.87 | 86.26 |
| Bra024841.1-P | Field mustard | nucleus | 85.87 | 86.26 |
| CDY60095 | Canola | nucleus | 84.98 | 85.75 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 60.31 | 63.29 |
| KRH58582 | Soybean | nucleus | 57.17 | 57.95 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 48.43 | 57.14 |
| AT1G25250.3 | Thale cress | nucleus | 49.33 | 57.14 |
| KRH42485 | Soybean | nucleus | 57.62 | 56.86 |
| AT1G68130.1 | Thale cress | nucleus | 51.57 | 54.89 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 45.96 | 53.95 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.62 | 53.78 |
| GSMUA_Achr10P... | Banana | nucleus | 45.07 | 52.48 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 48.88 | 51.42 |
| Solyc05g054030.2.1 | Tomato | nucleus | 41.26 | 48.29 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.26 | 48.04 |
| GSMUA_Achr10P... | Banana | nucleus | 42.38 | 47.37 |
| Zm00001d005871_P002 | Maize | nucleus | 45.29 | 45.8 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 40.13 | 44.2 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 40.58 | 43.72 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 48.21 | 43.7 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 40.58 | 43.61 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 47.98 | 43.58 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 47.76 | 43.38 |
| Os03t0237250-01 | Rice | plastid | 42.15 | 42.92 |
| Zm00001d020683_P001 | Maize | nucleus | 47.31 | 42.45 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 40.36 | 42.35 |
| EER96827 | Sorghum | nucleus | 46.86 | 41.88 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.7 | 41.52 |
| Zm00001d031759_P001 | Maize | nucleus | 47.98 | 41.31 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 41.7 | 41.15 |
| Os08t0467100-01 | Rice | nucleus | 48.21 | 40.34 |
| KXG39813 | Sorghum | nucleus, plastid | 41.48 | 40.3 |
| EES13982 | Sorghum | nucleus | 47.76 | 39.74 |
| AT3G50700.1 | Thale cress | nucleus | 28.25 | 27.88 |
| AT3G45260.1 | Thale cress | nucleus | 27.8 | 27.8 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 25.11 | 27.72 |
| AT1G55110.2 | Thale cress | nucleus | 27.35 | 26.81 |
| AT5G66730.1 | Thale cress | nucleus | 28.7 | 25.6 |
| AT5G60470.2 | Thale cress | nucleus | 26.23 | 25.49 |
| AT5G44160.1 | Thale cress | nucleus | 26.23 | 25.11 |
| AT5G03150.1 | Thale cress | nucleus | 26.23 | 23.26 |
| AT1G03840.1 | Thale cress | nucleus | 25.56 | 22.53 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 25.78 | 22.29 |
| AT1G14580.3 | Thale cress | nucleus | 23.99 | 22.25 |
| AT3G13810.2 | Thale cress | nucleus | 24.89 | 21.6 |
| AT2G02070.2 | Thale cress | nucleus | 26.46 | 19.6 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:814725 | ProteinID:AEC05525.1 | ArrayExpress:AT2G01940 | EnsemblPlantsGene:AT2G01940 | RefSeq:AT2G01940 |
| TAIR:AT2G01940 | RefSeq:AT2G01940-TAIR-G | EnsemblPlants:AT2G01940.3 | TAIR:AT2G01940.3 | Unigene:At.42019 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | RefSeq:NP_001077868.1 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0005058 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF6 | Symbol:SGR5 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00005DBF16 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
Coordinates
chr2:+:432275..435077
Molecular Weight (calculated)
50269.2 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.827
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGFFSSFRV ESFIEHQDNC
201: SARRVHREPP RPPQTAVTVP ACSSRTASTV STPSSETNYG GTVAVTTPQP LEGRPIHQRI SSSILTNSSN NLNLELQLLP LSSNQNPNQE NQQQKVKEPS
301: HHHNHNHDTT NLNLSIAPSS SYQHYNNFDR IKEIMASEQI MKIAMKEKAY AEEAKREAKR QREIAENEFA NAKKIRQKAQ AELERAKFLK EQSMKKISST
401: IMQVTCQTCK GQFQAVAVPA ATADETSLVV SYMSSANTDG ELENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGFFSSFRV ESFIEHQDNC
201: SARRVHREPP RPPQTAVTVP ACSSRTASTV STPSSETNYG GTVAVTTPQP LEGRPIHQRI SSSILTNSSN NLNLELQLLP LSSNQNPNQE NQQQKVKEPS
301: HHHNHNHDTT NLNLSIAPSS SYQHYNNFDR IKEIMASEQI MKIAMKEKAY AEEAKREAKR QREIAENEFA NAKKIRQKAQ AELERAKFLK EQSMKKISST
401: IMQVTCQTCK GQFQAVAVPA ATADETSLVV SYMSSANTDG ELENGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.