Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017432.1-P | Field mustard | nucleus | 98.0 | 100.0 |
| CDY63960 | Canola | nucleus | 98.0 | 97.56 |
| AT2G01940.3 | Thale cress | nucleus | 88.2 | 88.79 |
| CDY09400 | Canola | nucleus | 85.75 | 87.9 |
| CDY15800 | Canola | nucleus | 86.19 | 87.56 |
| CDY17620 | Canola | nucleus | 85.52 | 86.49 |
| CDY60095 | Canola | nucleus | 84.86 | 86.2 |
| CDX96046 | Canola | nucleus | 36.97 | 71.24 |
| CDY09390 | Canola | nucleus | 16.7 | 63.03 |
| CDY04118 | Canola | nucleus | 16.7 | 63.03 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 59.02 | 62.35 |
| CDY14910 | Canola | nucleus | 17.59 | 59.4 |
| CDY60366 | Canola | nucleus | 50.11 | 58.75 |
| CDX84974 | Canola | nucleus | 50.11 | 58.75 |
| KRH58582 | Soybean | nucleus | 56.79 | 57.95 |
| CDY04203 | Canola | plastid | 49.44 | 57.66 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 48.33 | 57.41 |
| CDY04204 | Canola | nucleus | 45.66 | 57.1 |
| KRH42485 | Soybean | nucleus | 57.24 | 56.86 |
| CDY36123 | Canola | nucleus | 47.22 | 56.08 |
| CDY07400 | Canola | nucleus | 51.45 | 55.93 |
| CDY51986 | Canola | nucleus | 46.99 | 55.82 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.77 | 54.32 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 45.66 | 53.95 |
| GSMUA_Achr10P... | Banana | nucleus | 44.99 | 52.74 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 48.55 | 51.42 |
| CDY72283 | Canola | nucleus | 21.6 | 51.32 |
| CDY37489 | Canola | nucleus | 20.94 | 51.09 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.43 | 48.56 |
| Solyc05g054030.2.1 | Tomato | nucleus | 40.98 | 48.29 |
| GSMUA_Achr10P... | Banana | nucleus | 42.09 | 47.37 |
| CDY53540 | Canola | nucleus | 20.27 | 46.91 |
| Zm00001d005871_P002 | Maize | nucleus | 44.99 | 45.8 |
| CDY04117 | Canola | nucleus | 21.6 | 45.33 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 40.31 | 44.69 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 40.76 | 44.2 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 40.76 | 44.1 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 47.88 | 43.7 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 47.66 | 43.58 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 47.66 | 43.58 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 40.53 | 42.82 |
| Os03t0237250-01 | Rice | plastid | 41.65 | 42.69 |
| Zm00001d020683_P001 | Maize | nucleus | 46.77 | 42.25 |
| CDY70142 | Canola | nucleus | 16.93 | 41.76 |
| EER96827 | Sorghum | nucleus | 46.33 | 41.68 |
| Zm00001d031759_P001 | Maize | nucleus | 47.88 | 41.51 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.2 | 41.29 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 40.98 | 40.71 |
| Os08t0467100-01 | Rice | nucleus | 48.11 | 40.53 |
| KXG39813 | Sorghum | nucleus, plastid | 41.2 | 40.3 |
| EES13982 | Sorghum | nucleus | 47.66 | 39.93 |
| CDX97281 | Canola | nucleus, plastid | 25.17 | 29.35 |
| CDY24490 | Canola | nucleus | 27.62 | 28.51 |
| CDX91304 | Canola | nucleus, plastid | 25.39 | 28.22 |
| CDX77936 | Canola | nucleus | 27.17 | 27.98 |
| CDX86010 | Canola | nucleus | 26.28 | 26.34 |
| CDY53836 | Canola | nucleus | 26.06 | 25.83 |
| CDX75732 | Canola | nucleus | 25.39 | 25.73 |
| CDY22307 | Canola | nucleus | 26.28 | 25.43 |
| CDX94759 | Canola | nucleus | 26.28 | 25.43 |
| CDY67009 | Canola | nucleus | 26.95 | 25.42 |
| CDY59418 | Canola | nucleus | 22.94 | 24.94 |
| CDX82515 | Canola | nucleus | 24.28 | 24.72 |
| CDX89862 | Canola | nucleus | 26.28 | 24.58 |
| CDX81372 | Canola | nucleus | 26.73 | 24.54 |
| CDY18188 | Canola | nucleus | 26.06 | 24.43 |
| CDY57128 | Canola | nucleus | 26.73 | 24.39 |
| CDY45271 | Canola | nucleus | 22.27 | 24.04 |
| CDY55238 | Canola | nucleus | 25.61 | 23.66 |
| CDY45270 | Canola | nucleus | 23.61 | 23.56 |
| CDY51742 | Canola | nucleus | 25.39 | 23.55 |
| CDX97521 | Canola | nucleus | 25.39 | 23.51 |
| CDY32514 | Canola | nucleus | 25.39 | 23.27 |
| CDY15814 | Canola | nucleus | 24.28 | 23.04 |
| CDY44344 | Canola | nucleus | 25.39 | 22.8 |
| CDX81653 | Canola | nucleus | 23.61 | 22.7 |
| CDY17440 | Canola | nucleus | 24.05 | 22.59 |
| CDX80854 | Canola | nucleus | 25.17 | 22.38 |
| CDY10404 | Canola | nucleus | 25.17 | 22.29 |
| CDY11241 | Canola | nucleus | 24.94 | 22.27 |
| CDY17614 | Canola | nucleus, plastid | 25.17 | 22.03 |
| CDY03081 | Canola | nucleus | 25.61 | 21.95 |
| CDY03080 | Canola | nucleus, plastid | 25.17 | 21.9 |
| CDY17615 | Canola | nucleus | 25.61 | 21.82 |
| CDX70328 | Canola | nucleus | 24.94 | 21.79 |
| CDY09391 | Canola | nucleus | 26.28 | 20.81 |
| CDY15811 | Canola | nucleus | 26.28 | 20.77 |
| CDY12268 | Canola | nucleus | 18.04 | 18.16 |
| CDY68983 | Canola | nucleus | 14.7 | 16.88 |
| CDY70938 | Canola | cytosol, nucleus | 9.35 | 15.38 |
| CDY67587 | Canola | cytosol, nucleus | 6.46 | 12.89 |
Protein Annotations
| EnsemblPlants:CDY04102 | EnsemblPlantsGene:GSBRNA2T00117744001 | Gene3D:3.30.160.60 | GO:A0A078ESU1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR34946 |
| PANTHER:PTHR34946:SF6 | PFscan:PS50157 | ProteinID:CDY04102 | ProteinID:CDY04102.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEE8D0 | MapMan:15.5.15 | : | : |
Description
BnaA09g18800D
Coordinates
chrLK031949:+:136850..139105
Molecular Weight (calculated)
50240.3 Da
IEP (calculated)
8.698
GRAVY (calculated)
-0.757
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTDQGAVVM LDDDASNKNT SNPCCVVSSS SSDPFLTSSE NGVTTTNTST QKRKRRPAGT PDPDAEVVSL SPRTLLESDR YICEICNQGF QRDQNLQMHR
101: RRHKVPWKLL KRDNNIEVKK RVYVCPEPTC LHHAPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKSYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF
201: IEHQDNCSVR KVNREPPPPK TAVTVPACSS ITASTASTPS SEGNNCGAVA VATPIPLEGR PIHLRNSCFT PSILTNSSSP NLELQLLPLT SNQNPNQENH
301: QHKVNEPSHH HHDTTNLNLS IAPSSSSYHR HYNNFDRIKE IMASEQMMKI AMKEKAYAEE AKREAKRQRE MAENEFMNAK KIRQQAQAEL ERAKLLKEQS
401: MKKISSMIMQ VTCQTCKGQF QAVAVPAAAD ETSLVVSYMS SANTDGEES
101: RRHKVPWKLL KRDNNIEVKK RVYVCPEPTC LHHAPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKSYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF
201: IEHQDNCSVR KVNREPPPPK TAVTVPACSS ITASTASTPS SEGNNCGAVA VATPIPLEGR PIHLRNSCFT PSILTNSSSP NLELQLLPLT SNQNPNQENH
301: QHKVNEPSHH HHDTTNLNLS IAPSSSSYHR HYNNFDRIKE IMASEQMMKI AMKEKAYAEE AKREAKRQRE MAENEFMNAK KIRQQAQAEL ERAKLLKEQS
401: MKKISSMIMQ VTCQTCKGQF QAVAVPAAAD ETSLVVSYMS SANTDGEES
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.