Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37489 | Canola | nucleus | 36.83 | 97.28 |
| CDX97521 | Canola | nucleus | 92.18 | 92.37 |
| CDY51742 | Canola | nucleus | 86.42 | 86.78 |
| CDY04118 | Canola | nucleus | 20.78 | 84.87 |
| CDY09390 | Canola | nucleus | 20.37 | 83.19 |
| CDX82515 | Canola | nucleus | 74.49 | 82.09 |
| CDX75732 | Canola | nucleus | 72.63 | 79.68 |
| CDY70142 | Canola | nucleus | 29.84 | 79.67 |
| AT3G13810.2 | Thale cress | nucleus | 80.25 | 75.88 |
| CDY14910 | Canola | nucleus | 20.16 | 73.68 |
| CDY72283 | Canola | nucleus | 27.37 | 70.37 |
| CDY53540 | Canola | nucleus | 25.72 | 64.43 |
| CDY04117 | Canola | nucleus | 27.57 | 62.62 |
| CDY70938 | Canola | cytosol, nucleus | 30.25 | 53.85 |
| CDX97281 | Canola | nucleus, plastid | 35.6 | 44.94 |
| CDX96046 | Canola | nucleus | 20.78 | 43.35 |
| CDX91304 | Canola | nucleus, plastid | 35.8 | 43.07 |
| CDY24490 | Canola | nucleus | 36.21 | 40.46 |
| CDX77936 | Canola | nucleus | 36.21 | 40.37 |
| CDX89862 | Canola | nucleus | 39.51 | 40.0 |
| CDY18188 | Canola | nucleus | 39.09 | 39.67 |
| CDY32514 | Canola | nucleus | 39.71 | 39.39 |
| CDX94759 | Canola | nucleus | 37.45 | 39.22 |
| CDY22307 | Canola | nucleus | 37.04 | 38.79 |
| CDY67009 | Canola | nucleus | 37.45 | 38.24 |
| CDX86010 | Canola | nucleus | 35.19 | 38.17 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 41.15 | 37.59 |
| CDY11241 | Canola | nucleus | 38.89 | 37.57 |
| CDY59418 | Canola | nucleus | 31.89 | 37.53 |
| CDY53836 | Canola | nucleus | 34.98 | 37.53 |
| CDX80854 | Canola | nucleus | 38.89 | 37.43 |
| CDY03081 | Canola | nucleus | 39.71 | 36.83 |
| CDY17615 | Canola | nucleus | 39.92 | 36.81 |
| CDY10404 | Canola | nucleus | 38.27 | 36.69 |
| CDX81372 | Canola | nucleus | 36.83 | 36.61 |
| CDY44344 | Canola | nucleus | 37.65 | 36.6 |
| CDY57128 | Canola | nucleus | 36.63 | 36.18 |
| CDY45271 | Canola | nucleus | 30.66 | 35.82 |
| CDX70328 | Canola | nucleus | 37.86 | 35.8 |
| CDY17440 | Canola | nucleus | 35.19 | 35.77 |
| CDY17614 | Canola | nucleus, plastid | 36.63 | 34.7 |
| CDX81653 | Canola | nucleus | 33.13 | 34.48 |
| CDY03080 | Canola | nucleus, plastid | 36.42 | 34.3 |
| CDY15814 | Canola | nucleus | 33.33 | 34.25 |
| CDY09391 | Canola | nucleus | 39.3 | 33.69 |
| CDY45270 | Canola | nucleus | 30.86 | 33.33 |
| CDY15811 | Canola | nucleus | 38.89 | 33.27 |
| CDX84974 | Canola | nucleus | 22.84 | 28.98 |
| CDY60366 | Canola | nucleus | 22.63 | 28.72 |
| CDY04204 | Canola | nucleus | 21.19 | 28.69 |
| CDY36123 | Canola | nucleus | 21.81 | 28.04 |
| CDY51986 | Canola | nucleus | 21.81 | 28.04 |
| CDY04203 | Canola | plastid | 22.02 | 27.79 |
| CDY07400 | Canola | nucleus | 23.05 | 27.12 |
| CDY67587 | Canola | cytosol, nucleus | 12.55 | 27.11 |
| CDY09400 | Canola | nucleus | 23.66 | 26.26 |
| CDY17620 | Canola | nucleus | 23.87 | 26.13 |
| CDY04102 | Canola | nucleus | 23.66 | 25.61 |
| CDY60095 | Canola | nucleus | 23.25 | 25.57 |
| CDY15800 | Canola | nucleus | 23.25 | 25.57 |
| CDY12268 | Canola | nucleus | 23.25 | 25.34 |
| CDY63960 | Canola | nucleus | 23.46 | 25.28 |
| CDY68983 | Canola | nucleus | 18.93 | 23.53 |
Protein Annotations
| EnsemblPlants:CDY55238 | EnsemblPlantsGene:GSBRNA2T00016584001 | Gene3D:3.30.160.60 | GO:A0A078IY05 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
| PFscan:PS50157 | ProteinID:CDY55238 | ProteinID:CDY55238.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EDDE0B | UniProt:A0A078IY05 | MapMan:15.5.15 | : | : |
Description
BnaCnng28590DBnaCnng28590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY05]
Coordinates
chrLK033386:-:55572..58227
Molecular Weight (calculated)
53697.2 Da
IEP (calculated)
8.048
GRAVY (calculated)
-0.856
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV PESQPQKKRR NQPGNPGPYE KNDPESEVIA LSPKTLMATN
101: RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDCKAHSKT
201: CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNQQQ TDDQIINYHH
301: HGVPTWLSPQ PQDLTSSNPS PSNGGGGGGL FSLAASPAMS ATALLQKAAQ MGSTRTTPLP PTTDFERSHN TLTTTMAAMT SPSGFITSNN NNQAFIQDYN
401: ASGFNHHHGG EEAFDNTFSG FLRTNADTTT AGSDTNKSGG GGEGLTRDFL GIRPLMSHNE ILSFVGLGNC INDAASDQLH PKPWQG
101: RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDCKAHSKT
201: CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNQQQ TDDQIINYHH
301: HGVPTWLSPQ PQDLTSSNPS PSNGGGGGGL FSLAASPAMS ATALLQKAAQ MGSTRTTPLP PTTDFERSHN TLTTTMAAMT SPSGFITSNN NNQAFIQDYN
401: ASGFNHHHGG EEAFDNTFSG FLRTNADTTT AGSDTNKSGG GGEGLTRDFL GIRPLMSHNE ILSFVGLGNC INDAASDQLH PKPWQG
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.