Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026624.1-P | Field mustard | nucleus | 93.89 | 94.75 |
| CDY09400 | Canola | nucleus | 93.67 | 94.52 |
| CDY60095 | Canola | nucleus | 89.37 | 89.37 |
| CDY17620 | Canola | nucleus | 88.69 | 88.29 |
| AT2G01940.3 | Thale cress | nucleus | 87.56 | 86.77 |
| CDY63960 | Canola | nucleus | 88.24 | 86.47 |
| CDY04102 | Canola | nucleus | 87.56 | 86.19 |
| CDX96046 | Canola | nucleus | 38.24 | 72.53 |
| CDY04118 | Canola | nucleus | 17.19 | 63.87 |
| CDY09390 | Canola | nucleus | 17.19 | 63.87 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 60.18 | 62.59 |
| CDY14910 | Canola | nucleus | 17.65 | 58.65 |
| KRH58582 | Soybean | nucleus | 58.37 | 58.64 |
| CDX84974 | Canola | nucleus | 50.45 | 58.22 |
| CDY60366 | Canola | nucleus | 50.23 | 57.96 |
| CDY04203 | Canola | plastid | 50.23 | 57.66 |
| CDY04204 | Canola | nucleus | 46.83 | 57.66 |
| KRH42485 | Soybean | nucleus | 58.37 | 57.08 |
| CDY36123 | Canola | nucleus | 48.42 | 56.61 |
| CDY51986 | Canola | nucleus | 48.19 | 56.35 |
| CDY07400 | Canola | nucleus | 52.49 | 56.17 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 47.96 | 56.08 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 47.06 | 54.74 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 45.48 | 54.32 |
| GSMUA_Achr10P... | Banana | nucleus | 45.02 | 51.96 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 49.32 | 51.42 |
| CDY37489 | Canola | nucleus | 21.27 | 51.09 |
| CDY72283 | Canola | nucleus | 21.49 | 50.26 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.63 | 48.04 |
| GSMUA_Achr10P... | Banana | nucleus | 42.99 | 47.62 |
| Solyc05g054030.2.1 | Tomato | nucleus | 40.95 | 47.51 |
| CDY53540 | Canola | nucleus | 20.59 | 46.91 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 41.18 | 44.94 |
| CDY04117 | Canola | nucleus | 21.72 | 44.86 |
| Zm00001d005871_P002 | Maize | nucleus | 44.57 | 44.67 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 41.63 | 44.44 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 41.63 | 44.34 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 48.42 | 43.5 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 47.96 | 43.18 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 41.4 | 43.06 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 47.74 | 42.97 |
| Os03t0237250-01 | Rice | plastid | 42.53 | 42.92 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 42.53 | 41.59 |
| Zm00001d020683_P001 | Maize | nucleus | 46.61 | 41.45 |
| Zm00001d031759_P001 | Maize | nucleus | 48.42 | 41.31 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.86 | 41.29 |
| EER96827 | Sorghum | nucleus | 46.61 | 41.28 |
| CDY70142 | Canola | nucleus | 16.74 | 40.66 |
| KXG39813 | Sorghum | nucleus, plastid | 41.86 | 40.3 |
| Os08t0467100-01 | Rice | nucleus | 48.19 | 39.96 |
| EES13982 | Sorghum | nucleus | 48.19 | 39.74 |
| CDX97281 | Canola | nucleus, plastid | 25.34 | 29.09 |
| CDY24490 | Canola | nucleus | 27.6 | 28.05 |
| CDX91304 | Canola | nucleus, plastid | 25.57 | 27.97 |
| CDX77936 | Canola | nucleus | 27.15 | 27.52 |
| CDX86010 | Canola | nucleus | 26.92 | 26.56 |
| CDY53836 | Canola | nucleus | 26.7 | 26.05 |
| CDX75732 | Canola | nucleus | 25.79 | 25.73 |
| CDY59418 | Canola | nucleus | 23.53 | 25.18 |
| CDX94759 | Canola | nucleus | 26.24 | 25.0 |
| CDY22307 | Canola | nucleus | 26.24 | 25.0 |
| CDX82515 | Canola | nucleus | 24.89 | 24.94 |
| CDY67009 | Canola | nucleus | 26.7 | 24.79 |
| CDX89862 | Canola | nucleus | 26.02 | 23.96 |
| CDY18188 | Canola | nucleus | 25.79 | 23.8 |
| CDY45271 | Canola | nucleus | 22.4 | 23.8 |
| CDY51742 | Canola | nucleus | 25.79 | 23.55 |
| CDX81372 | Canola | nucleus | 26.02 | 23.52 |
| CDY57128 | Canola | nucleus | 26.02 | 23.37 |
| CDY45270 | Canola | nucleus | 23.76 | 23.33 |
| CDX97521 | Canola | nucleus | 25.57 | 23.3 |
| CDY55238 | Canola | nucleus | 25.57 | 23.25 |
| CDY15814 | Canola | nucleus | 24.66 | 23.04 |
| CDY44344 | Canola | nucleus | 26.02 | 23.0 |
| CDX81653 | Canola | nucleus | 23.98 | 22.7 |
| CDY32514 | Canola | nucleus | 25.11 | 22.65 |
| CDY17440 | Canola | nucleus | 24.43 | 22.59 |
| CDX80854 | Canola | nucleus | 25.79 | 22.57 |
| CDY10404 | Canola | nucleus | 25.79 | 22.49 |
| CDY11241 | Canola | nucleus | 25.57 | 22.47 |
| CDY17614 | Canola | nucleus, plastid | 25.57 | 22.03 |
| CDY03081 | Canola | nucleus | 26.02 | 21.95 |
| CDY03080 | Canola | nucleus, plastid | 25.57 | 21.9 |
| CDY17615 | Canola | nucleus | 26.02 | 21.82 |
| CDX70328 | Canola | nucleus | 25.34 | 21.79 |
| CDY09391 | Canola | nucleus | 26.7 | 20.81 |
| CDY15811 | Canola | nucleus | 26.47 | 20.6 |
| CDY12268 | Canola | nucleus | 18.1 | 17.94 |
| CDY68983 | Canola | nucleus | 14.93 | 16.88 |
| CDY70938 | Canola | cytosol, nucleus | 9.5 | 15.38 |
| CDY67587 | Canola | cytosol, nucleus | 6.33 | 12.44 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078FMX7 | UniProt:A0A078FMX7 | EnsemblPlants:CDY15800 | ProteinID:CDY15800 |
| ProteinID:CDY15800.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | EnsemblPlantsGene:GSBRNA2T00090106001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF6 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EEFA5E | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaC02g34190DBnaC02g34190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMX7]
Coordinates
chrLK032058:+:159750..162370
Molecular Weight (calculated)
49497.7 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.759
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTDQGAVVM LDDAASKKNT TNTRCVVFSS SDILLPSSEN GVTTTKTSTQ KRKRRPAGTP DPDAEVVSLS PRTLLESDRY ICEICNQGFQ RDQNLQMHRR
101: RHKVPWKLLK RDNNIEVKKR VYVCPEPTCL HHDPCHALGD LVGIKKHFRR KHSNHKQWVC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI
201: EHQDNCSIRK VHHEPPPPPQ AMVNVPACSS RTASTASTPS TETNYGGAVA TPLPLEGRPI PIRNSSNDVN LELQLLPLTP NQNPNQENQQ HKVKEPSHHR
301: NHHDTTNLNL SIAPSAPSLS HQYNNFDRIK EIMASEQIMK IAMKEKAYAE EAKREAKRQR EIAENEFVNA KKIRQQAQAE LERAKLLKEQ SVKKISSTIM
401: QVTCQICKGQ FQAVAVPAAA SADETSLVVS YMSSANTDGE AS
101: RHKVPWKLLK RDNNIEVKKR VYVCPEPTCL HHDPCHALGD LVGIKKHFRR KHSNHKQWVC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI
201: EHQDNCSIRK VHHEPPPPPQ AMVNVPACSS RTASTASTPS TETNYGGAVA TPLPLEGRPI PIRNSSNDVN LELQLLPLTP NQNPNQENQQ HKVKEPSHHR
301: NHHDTTNLNL SIAPSAPSLS HQYNNFDRIK EIMASEQIMK IAMKEKAYAE EAKREAKRQR EIAENEFVNA KKIRQQAQAE LERAKLLKEQ SVKKISSTIM
401: QVTCQICKGQ FQAVAVPAAA SADETSLVVS YMSSANTDGE AS
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.