Factsheet for GSMUA_Achr6P02490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P18610_001	Banana	nucleus	74.05	72.49
GSMUA_Achr5P23130_001	Banana	nucleus	69.73	67.89
GSMUA_Achr10P...	Banana	nucleus	67.57	65.27
CDX96046	Canola	nucleus	39.73	63.09
GSMUA_Achr3P20220_001	Banana	nucleus	68.11	59.43
Solyc01g005060.2.1	Tomato	nucleus	50.0	54.57
CDY04204	Canola	nucleus	50.54	52.09
KRH41885	Soybean	nucleus	52.43	51.05
AT1G25250.3	Thale cress	nucleus	52.97	50.91
Bra010981.1-P	Field mustard	nucleus	51.89	50.79
CDY51986	Canola	nucleus	51.89	50.79
CDY36123	Canola	nucleus	51.89	50.79
KRH60588	Soybean	nucleus	54.86	50.75
CDX84974	Canola	nucleus	51.89	50.13
Bra024771.1-P	Field mustard	nucleus	51.62	49.87
CDY60366	Canola	nucleus	51.62	49.87
CDY04203	Canola	plastid	51.62	49.61
VIT_01s0011g06400.t01	Wine grape	nucleus	56.49	49.18
AT1G68130.1	Thale cress	nucleus	54.59	48.21
Bra004050.1-P	Field mustard	nucleus	53.78	48.18
CDY07400	Canola	nucleus	53.78	48.18
Bra004283.1-P	Field mustard	nucleus	53.51	48.06
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	49.73	48.04
KRH58582	Soybean	nucleus	56.76	47.73
Solyc06g072360.2.1	Tomato	nucleus	50.54	47.7
PGSC0003DMT400079735	Potato	nucleus, plastid	55.95	47.37
VIT_17s0000g01870.t01	Wine grape	nucleus	58.11	47.25
Zm00001d005871_P002	Maize	nucleus	55.95	46.94
KRH42485	Soybean	nucleus	57.3	46.9
GSMUA_Achr10P...	Banana	nucleus	49.46	45.86
PGSC0003DMT400069306	Potato	nucleus	50.81	45.74
Bra017432.1-P	Field mustard	nucleus	54.32	45.68
Bra026624.1-P	Field mustard	nucleus	54.05	45.66
CDY09400	Canola	nucleus	54.05	45.66
CDY15800	Canola	nucleus	54.32	45.48
KRH38986	Soybean	nucleus	58.11	45.36
Zm00001d020683_P001	Maize	nucleus	60.81	45.27
CDY63960	Canola	nucleus	54.59	44.79
Solyc03g098070.2.1	Tomato	nucleus	44.05	44.78
CDY04102	Canola	nucleus	54.32	44.77
KRH48724	Soybean	nucleus	58.38	44.72
TraesCS5B01G232200.1	Wheat	nucleus	59.46	44.72
AT2G01940.3	Thale cress	nucleus	53.78	44.62
TraesCS5D01G240600.1	Wheat	nucleus	59.19	44.6
Bra024841.1-P	Field mustard	nucleus	53.51	44.59
CDY17620	Canola	nucleus	53.51	44.59
TraesCS5A01G233700.1	Wheat	nucleus	58.92	44.4
CDY60095	Canola	nucleus	52.97	44.34
EER96827	Sorghum	nucleus	59.73	44.29
Zm00001d031759_P001	Maize	nucleus	59.73	42.66
Solyc05g054030.2.1	Tomato	nucleus	42.43	41.21
EES13982	Sorghum	nucleus	59.46	41.04
Os08t0467100-01	Rice	nucleus	58.92	40.9
GSMUA_Achr2P08460_001	Banana	nucleus	28.38	33.33
GSMUA_Achr7P14780_001	Banana	nucleus	31.62	32.77
GSMUA_Achr3P25410_001	Banana	nucleus	28.11	31.9
GSMUA_Achr7P22720_001	Banana	mitochondrion	24.05	31.67
GSMUA_Achr2P16690_001	Banana	nucleus	30.54	30.71
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	29.73	30.22
GSMUA_Achr7P13540_001	Banana	nucleus	29.19	29.59
GSMUA_Achr9P06650_001	Banana	nucleus	28.38	28.61
GSMUA_Achr5P22140_001	Banana	nucleus	29.46	28.61
GSMUA_Achr2P08910_001	Banana	nucleus	29.73	28.57
GSMUA_Achr10P...	Banana	nucleus	28.92	28.38
GSMUA_Achr8P10040_001	Banana	nucleus	31.89	26.4
GSMUA_Achr11P...	Banana	nucleus	29.46	26.33
GSMUA_Achr3P13990_001	Banana	nucleus	30.27	26.29
GSMUA_Achr7P09150_001	Banana	nucleus	28.65	25.85
GSMUA_Achr6P27030_001	Banana	nucleus	24.32	25.42
GSMUA_Achr1P17940_001	Banana	nucleus	31.89	25.27
GSMUA_Achr10P...	Banana	nucleus	30.27	24.94
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	26.76	24.87
GSMUA_Achr1P07110_001	Banana	nucleus	31.08	23.66
GSMUA_Achr10P...	Banana	nucleus	30.54	23.59
GSMUA_Achr5P06450_001	Banana	nucleus	29.73	23.11
GSMUA_Achr7P24170_001	Banana	nucleus	30.81	22.71
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	29.46	22.29
GSMUA_Achr9P23870_001	Banana	nucleus	25.95	22.12
GSMUA_Achr4P07200_001	Banana	nucleus	31.89	21.85
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	28.92	21.84
GSMUA_Achr4P14030_001	Banana	nucleus	31.89	21.73
GSMUA_Achr11P...	Banana	nucleus	29.19	21.14
GSMUA_Achr11P...	Banana	nucleus	30.27	21.01
GSMUA_Achr3P29940_001	Banana	nucleus	32.97	21.0
GSMUA_Achr4P04310_001	Banana	nucleus	26.49	20.72
GSMUA_Achr7P25960_001	Banana	nucleus	32.97	20.61
GSMUA_Achr1P02080_001	Banana	nucleus	30.27	20.48
GSMUA_Achr4P05240_001	Banana	nucleus	27.57	20.4
GSMUA_Achr11P...	Banana	nucleus	30.27	19.79
GSMUA_AchrUn_...	Banana	nucleus	31.08	12.94

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr6G02490_001	EnsemblPlants:GSMUA_Achr6P02490_001	EnsemblPlants:GSMUA_Achr6T02490_001	InterPro:IPR013087	UniProt:M0T3J7	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF43	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000294857D
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

ZOS9-14 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G02490_001]

Coordinates

chr6:-:1620934..1622521

Molecular Weight (calculated)

41406.1 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.728

Length

370 amino acids

Sequence
(BLAST)

001: MLGPPSPAPS THLGGTTISS TFPQHSATNS KKKRRPAGTP DPDAEVVALS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK REAADQVRKR
101: VFVCPEPTCL HHDPAHALGD LVGIKKHFRR KHSSHRQWVC ARCSKAYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTAGQ ARAQLQLTTQ
201: PPACLSRTTS TTSRSSDTNF SPRLQLLPPP SRRHTPLSSS ALLSTAIEEA KATKLQLSIA LAEEARQQAR RQLELAEHEY EKAKGMRQRA QQELDRVHAV
301: REQAVKQINS TLLQITCYAC KQQFQAKSAM ASEVNSLVVS YMSVMTEGEE DNDDHGDPRK ISRSQLPSTS

Best Arabidopsis Sequence Match ( AT1G25250.3 )
(BLAST)

001: MIHYEQNNNL QNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE

Arabidopsis Description

AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.