Factsheet for Bra024841.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17620	Canola	nucleus	100.0	100.0
Bra026624.1-P	Field mustard	nucleus	86.49	87.67
AT2G01940.3	Thale cress	nucleus	86.26	85.87
Bra017432.1-P	Field mustard	nucleus	84.68	85.45
VIT_01s0011g06400.t01	Wine grape	nucleus	60.14	62.82
KRH58582	Soybean	nucleus	57.88	58.41
KRH42485	Soybean	nucleus	57.88	56.86
Bra024771.1-P	Field mustard	nucleus	48.87	56.66
GSMUA_Achr7P18610_001	Banana	nucleus	47.97	56.35
Bra004050.1-P	Field mustard	nucleus	51.8	55.69
Bra004283.1-P	Field mustard	nucleus	51.35	55.34
Bra010981.1-P	Field mustard	nucleus	47.07	55.29
GSMUA_Achr5P23130_001	Banana	nucleus	46.17	53.95
GSMUA_Achr6P02490_001	Banana	nucleus	44.59	53.51
Bra036013.1-P	Field mustard	nucleus	18.92	53.16
GSMUA_Achr10P...	Banana	nucleus	45.05	52.22
GSMUA_Achr3P20220_001	Banana	nucleus	49.1	51.42
GSMUA_Achr10P...	Banana	nucleus	43.69	48.62
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	41.44	48.04
Solyc05g054030.2.1	Tomato	nucleus	41.22	48.03
Zm00001d005871_P002	Maize	nucleus	45.5	45.8
TraesCS4B01G230800.1	Wheat	nucleus, plastid	41.22	45.19
TraesCS4D01G232000.1	Wheat	nucleus, plastid	41.67	44.69
TraesCS4A01G074700.1	Wheat	nucleus, plastid	41.67	44.58
HORVU4Hr1G064740.2	Barley	nucleus, plastid	41.44	43.29
TraesCS5B01G232200.1	Wheat	nucleus	47.97	43.29
TraesCS5A01G233700.1	Wheat	nucleus	47.75	43.18
TraesCS5D01G240600.1	Wheat	nucleus	47.75	43.18
Os03t0237250-01	Rice	plastid	42.34	42.92
Zm00001d020683_P001	Maize	nucleus	47.3	42.25
EER96827	Sorghum	nucleus	47.07	41.88
Zm00001d031759_P001	Maize	nucleus	48.42	41.51
Zm00001d028361_P001	Maize	nucleus, plastid	42.12	41.37
Zm00001d047976_P001	Maize	nucleus, plastid	41.44	41.07
KXG39813	Sorghum	nucleus, plastid	41.44	40.09
EES13982	Sorghum	nucleus	48.2	39.93
Os08t0467100-01	Rice	nucleus	47.75	39.77
Bra036098.1-P	Field mustard	nucleus, plastid	28.15	28.67
Bra018535.1-P	Field mustard	plastid	25.9	28.47
Bra033840.1-P	Field mustard	nucleus	28.38	27.81
Bra030886.1-P	Field mustard	nucleus	26.58	27.0
Bra033724.1-P	Field mustard	nucleus	26.35	25.22
Bra015271.1-P	Field mustard	nucleus	26.8	24.69
Bra037151.1-P	Field mustard	nucleus	27.03	24.39
Bra032541.1-P	Field mustard	nucleus	25.9	23.47
Bra026204.1-P	Field mustard	nucleus, plastid	23.65	23.33
Bra026819.1-P	Field mustard	nucleus	24.32	23.13
Bra027394.1-P	Field mustard	nucleus	26.13	22.97
Bra021510.1-P	Field mustard	nucleus	26.35	22.94
Bra005741.1-P	Field mustard	nucleus	25.45	22.42
Bra001523.1-P	Field mustard	nucleus	25.68	22.27
Bra026203.1-P	Field mustard	nucleus, plastid	23.2	22.2
Bra009549.1-P	Field mustard	nucleus	25.68	22.09
Bra024833.1-P	Field mustard	plastid	25.45	22.03
Bra026616.1-P	Field mustard	nucleus	25.0	21.72
Bra024834.1-P	Field mustard	nucleus, plastid	26.35	21.2
Bra023223.1-P	Field mustard	plastid	22.3	20.62
Bra040974.1-P	Field mustard	nucleus, plastid	26.58	20.17
Bra026617.1-P	Field mustard	nucleus	26.58	20.0
Bra038293.1-P	Field mustard	nucleus	26.58	13.32

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra024841	EnsemblPlants:Bra024841.1	EnsemblPlants:Bra024841.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	InterPro:IPR013087	UniProt:M4E7T5	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR34946	PANTHER:PTHR34946:SF6	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253F931	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

AT2G01940 (E=4e-166) SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA06:-:23752917..23755335

Molecular Weight (calculated)

49878.9 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.801

Length

444 amino acids

Sequence
(BLAST)

001: MKTDQGAVVM LDDAASKKNT ANTRCVVFSS SDPLLSSSEN GVTTTKTSIQ KRKRRPAGTP DPDAEVVSLS PRTLLESDRY ICEICNQGFQ RDQNLQMHRR
101: RHKVPWKLLK RDNNIEVKKR VYVCPEPSCL HHDPCHALGD LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI
201: EHQDNCSVRN VHHEPPPPPQ TAVIVTACSS RTASTASTPS SETNYGGAVT VATPLPLEGR PIHIRSSSLT PLLLTNSSNL NLELQLLPST PNLNPNQENQ
301: QHKVKEPSLH HHHHHHNHDT TNLNLSIAPS SSSYHHYNNF DRIKELMASE EIMKEKAYAE EAKREAKRQR EIAENEFANA KKIRQQAQTE LKRAKLLKEQ
401: SMKKISSTLM QVTCQTCKGQ FQATEETSLV VSYMSSANTD GEGS

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.