Factsheet for Bra038293.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53836	Canola	nucleus	50.11	98.01
AT3G45260.1	Thale cress	nucleus	40.07	79.6
Bra033840.1-P	Field mustard	nucleus	39.39	77.04
Bra036013.1-P	Field mustard	nucleus	11.85	66.46
Bra036098.1-P	Field mustard	nucleus, plastid	20.2	41.05
Bra018535.1-P	Field mustard	plastid	17.95	39.36
Bra030886.1-P	Field mustard	nucleus	19.19	38.9
Bra015271.1-P	Field mustard	nucleus	20.2	37.14
Bra033724.1-P	Field mustard	nucleus	19.3	36.85
Bra032541.1-P	Field mustard	nucleus	20.09	36.33
Bra037151.1-P	Field mustard	nucleus	19.98	35.98
Bra005741.1-P	Field mustard	nucleus	19.75	34.72
Bra009549.1-P	Field mustard	nucleus	19.98	34.3
Bra026204.1-P	Field mustard	nucleus, plastid	17.38	34.22
Bra027394.1-P	Field mustard	nucleus	18.96	33.27
Bra026819.1-P	Field mustard	nucleus	17.38	32.98
Bra021510.1-P	Field mustard	nucleus	18.85	32.75
Bra024833.1-P	Field mustard	plastid	18.51	31.97
Bra026203.1-P	Field mustard	nucleus, plastid	16.7	31.9
Bra001523.1-P	Field mustard	nucleus	18.4	31.84
Bra026616.1-P	Field mustard	nucleus	18.17	31.51
Bra024834.1-P	Field mustard	nucleus, plastid	19.41	31.16
Bra040974.1-P	Field mustard	nucleus, plastid	20.09	30.43
Bra023223.1-P	Field mustard	plastid	16.37	30.21
Bra026617.1-P	Field mustard	nucleus	19.75	29.66
Bra010981.1-P	Field mustard	nucleus	12.64	29.63
Bra024771.1-P	Field mustard	nucleus	12.64	29.24
Bra026624.1-P	Field mustard	nucleus	13.21	26.71
Bra004283.1-P	Field mustard	nucleus	12.42	26.7
Bra024841.1-P	Field mustard	nucleus	13.32	26.58
Bra004050.1-P	Field mustard	nucleus	12.3	26.39
Bra017432.1-P	Field mustard	nucleus	13.09	26.36

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra038293	EnsemblPlants:Bra038293.1	EnsemblPlants:Bra038293.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:JKD-like
UniProt:M4FB27	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253EEF9	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

AT3G45260 (E=2e-163) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:+:11506463..11513572

Molecular Weight (calculated)

101514.0 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.700

Length

886 amino acids

Sequence
(BLAST)

001: MIIPDDHHHL SFPSYVLHQE HITPNPNPNP NPTASNSNKR KRNLPDPDAE VIALSPNSLM TTNRFICEIC NKGFKRDQNL QLHRRGHNLP WKLKQRTDKE
101: QVKKKVYICP EKTCVHHDPG RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVVSDWKAH SKICGTREYK CDCGTLFSRK DSFITHRAFC DALAEESARF
201: ASVPPAAAAY LNNSSDAEVN LGNIKPNHQQ RLLDLTSSQL DRHGFNVNRN NINGFMGQSS TNQLPLAANV FASSSSPSPH SASALLQNLW QLQGQSYQQW
301: LLNKNNNNII QSGMPNNQED HDTIRRELVI NGSSFSSEAR TSYNQNGGQE IASMSATTLL QMAAQIGSKR SSSSSNNGMA FGLVTSSIFN NKEMENKIKT
401: KEFDERGFTR DFLGVGSQNR HRPILMVNHN LPTTNDGTPT TYMNHSSRIL PEFQQMIIPV SLRWIPNEAQ PFKEAYEILK SIQGLTRWTD FWWSCIKVLK
501: EDPFAREMIF YNESDHDKIT FLEGYTGYDR HGAFSGECFK ALQHCHGDPP SANREQNITR TTMESHKEFG VPSNSELMSL FEEIGYKRGF GNNGGGGGNR
601: IIRLNELYSR GLENLTNEEL LELYDLEDEE YIDMILQPLM EYYKRHFSKQ PMVLERGLGW QNLENQIHNN PNHCMNMLRM HPEAFQNLCT TLEHRHNLKS
701: TDHISVDEMV AIFLVTCAQN DTQRYVGLSF GRSQETIYRK FHEVLDAVES LACEYLKTPT MASLQLYPRK LRENSNYWPF FSGFIGALDG THVRVKVGGS
801: DAVGYWDRHG QTSLNIMGIC DINMIFTYAW LDADFEDRYS SGQEEQRRRI EEEELSRLEE DEITTDGQYM NNIRDEIANM IWNEHL

Best Arabidopsis Sequence Match ( AT3G45260.2 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.