Factsheet for Bra024834.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17615	Canola	nucleus	95.47	100.0
CDY03081	Canola	nucleus	92.57	97.52
Bra040974.1-P	Field mustard	nucleus, plastid	87.32	82.39
AT2G02070.2	Thale cress	nucleus	88.22	80.9
Bra026617.1-P	Field mustard	nucleus	85.87	80.34
Bra036013.1-P	Field mustard	nucleus	19.2	67.09
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.33	50.55
KRG89168	Soybean	nucleus, plastid	31.16	49.43
Bra026616.1-P	Field mustard	nucleus	44.38	47.95
Bra024833.1-P	Field mustard	plastid	44.02	47.37
GSMUA_Achr3P13990_001	Banana	nucleus	35.69	46.24
Bra015271.1-P	Field mustard	nucleus	39.67	45.44
Bra026819.1-P	Field mustard	nucleus	38.41	45.4
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	31.88	44.22
Bra033724.1-P	Field mustard	nucleus	37.14	44.18
Bra032541.1-P	Field mustard	nucleus	38.95	43.88
GSMUA_Achr1P17940_001	Banana	nucleus	36.96	43.68
Bra030886.1-P	Field mustard	nucleus	33.7	42.56
GSMUA_Achr10P...	Banana	nucleus	36.59	42.17
Bra018535.1-P	Field mustard	plastid	30.8	42.08
GSMUA_Achr1P07110_001	Banana	nucleus	36.78	41.77
Bra036098.1-P	Field mustard	nucleus, plastid	32.97	41.74
GSMUA_Achr9P23870_001	Banana	nucleus	32.07	40.78
KRH49485	Soybean	nucleus	39.31	39.96
PGSC0003DMT400075837	Potato	nucleus	37.5	39.96
Os09t0555700-02	Rice	nucleus	38.59	39.81
KRG89167	Soybean	nucleus, plastid	39.31	39.53
Bra033840.1-P	Field mustard	nucleus	32.43	39.51
KRH34792	Soybean	nucleus	39.67	39.46
KRH49489	Soybean	nucleus, plastid	38.04	39.4
KRG90705	Soybean	nucleus	40.4	39.33
Bra021510.1-P	Field mustard	nucleus	36.05	39.02
GSMUA_Achr4P04310_001	Banana	nucleus	33.33	38.9
KRH36039	Soybean	nucleus	40.22	38.88
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.42	38.85
Solyc04g008500.2.1	Tomato	nucleus	36.23	38.68
VIT_01s0010g02100.t01	Wine grape	nucleus	39.86	38.46
Bra027394.1-P	Field mustard	nucleus	35.14	38.42
KRG91985	Soybean	nucleus	38.95	38.39
Bra009549.1-P	Field mustard	nucleus	35.69	38.18
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	33.88	38.16
Bra005741.1-P	Field mustard	nucleus	34.78	38.1
Bra037151.1-P	Field mustard	nucleus	33.33	37.4
EES11271	Sorghum	nucleus	40.58	37.4
Os08t0554400-02	Rice	nucleus	36.96	37.23
Bra026204.1-P	Field mustard	nucleus, plastid	30.25	37.11
Bra001523.1-P	Field mustard	nucleus	34.42	37.11
TraesCS5A01G356100.1	Wheat	nucleus, plastid	36.59	37.06
TraesCS5B01G358600.1	Wheat	nucleus, plastid	36.59	37.0
TraesCS5D01G364900.1	Wheat	nucleus, plastid	36.59	36.93
TraesCS2B01G421100.1	Wheat	nucleus	40.94	36.93
KXG25416	Sorghum	nucleus	36.96	36.89
GSMUA_Achr1P02080_001	Banana	nucleus	36.41	36.75
TraesCS6B01G271000.1	Wheat	nucleus	38.04	36.46
Zm00001d017560_P001	Maize	nucleus	38.41	36.43
TraesCS6D01G235800.1	Wheat	nucleus	38.04	36.33
Zm00001d026113_P006	Maize	nucleus	39.31	36.23
TraesCS6A01G254500.1	Wheat	nucleus	37.86	36.16
Os04t0566400-02	Rice	nucleus	39.86	35.89
GSMUA_Achr11P...	Banana	nucleus	34.6	35.83
KXG31026	Sorghum	nucleus	38.59	35.8
GSMUA_Achr4P05240_001	Banana	nucleus	32.25	35.6
Zm00001d021403_P001	Maize	nucleus	31.16	35.54
GSMUA_Achr11P...	Banana	nucleus	32.79	35.42
OQU89911	Sorghum	nucleus, plastid	34.06	35.27
Zm00001d002654_P003	Maize	nucleus	40.4	35.23
Bra026203.1-P	Field mustard	nucleus, plastid	29.17	34.7
Os02t0672100-01	Rice	nucleus	38.22	34.31
TraesCS2D01G400300.2	Wheat	nucleus	40.94	34.14
TraesCS2A01G403200.2	Wheat	nucleus	40.94	34.09
Zm00001d031992_P001	Maize	nucleus	36.78	33.55
Bra023223.1-P	Field mustard	plastid	28.99	33.33
GSMUA_Achr11P...	Banana	nucleus	32.07	31.27
KXG36163	Sorghum	nucleus	30.62	29.04
Bra010981.1-P	Field mustard	nucleus	19.38	28.31
Bra024771.1-P	Field mustard	nucleus	19.57	28.2
Bra026624.1-P	Field mustard	nucleus	21.38	26.94
Zm00001d006319_P001	Maize	nucleus	26.99	26.65
Bra004283.1-P	Field mustard	nucleus	19.75	26.46
Bra024841.1-P	Field mustard	nucleus	21.2	26.35
Bra004050.1-P	Field mustard	nucleus	19.57	26.15
Bra017432.1-P	Field mustard	nucleus	20.83	26.14
Bra038293.1-P	Field mustard	nucleus	31.16	19.41

Protein Annotations

EnsemblPlants:Bra024834.1	EnsemblPlants:Bra024834.1-P	EnsemblPlantsGene:Bra024834	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253F8DC	UniProt:M4E7S8	MapMan:15.5.15	:

Description

AT2G02070 (E=2e-131) AtIDD5 | AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA06:-:23701116..23704800

Molecular Weight (calculated)

58994.4 Da

IEP (calculated)

9.980

GRAVY (calculated)

-0.761

Length

552 amino acids

Sequence
(BLAST)

001: MAASSSSAAS FFGVRQDEQS HLLPPNSSAA VPPPPPPPPH HQPPQPQQPL EAPPQKKKRN QPRTPNSDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL
101: QLHRRGHNLP WKLKQKSTKE VKRKVYLCPE PSCVHHDPSR ALGDLTGIKK HYYRKHGEKK WKCEKCSKRY AVQSDWKAHS KTCGTKEYRC DCGTLFSRRD
201: SFITHRAFCD ALAQESARHP TSLTSLPSHH FPYGQTTNNS NNNTPSMILG LPHIGNPQNL DHQSGDVLRL GSGGGGFLAA SNNIKPSPMN FQQSLMQFSN
301: DNHNSPSSNL FNLSFLSGNN GIASGTSNPN AAAVPSANHM LSNHFGGENA VGGSGGGSTG LFPNNLMSSA GRINSGAVPS LFSSSMQNPN SASHMSATAL
401: LQKAAQMGSS TSSSNNNNTN NASSILRSFG SGMYGENESN LHDLMNSFSN PGATGNSANG VDSQFGTYGG VNKGLSADKQ NMTRDFLGVG QIVRSMSGSA
501: GFQQQQQQQH GNGGRERVGS SSDSADRNSM NVNPGGGGST SSPPYGIHHA SF

Best Arabidopsis Sequence Match ( AT2G02070.1 )
(BLAST)

001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF

Arabidopsis Description

IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.