Factsheet for Bra009549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005741.1-P
Bra007056.1-P
Bra009549.1-P
Bra010606.1-P
Bra011777.1-P
Bra015271.1-P
Bra017842.1-P
Bra032541.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	Bra015271.1-P	AT1G03840.1	17785527
AT5G03150.1	Bra032541.1-P	AT1G03840.1	17785527
AT5G03150.1	Bra007056.1-P	AT3G54220.1	17785527
AT5G03150.1	Bra010606.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra011777.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra017842.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra005741.1-P	AT5G03150.1	17785527
AT5G03150.1	Bra009549.1-P	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70328	Canola	nucleus	97.48	97.86
CDY10404	Canola	nucleus	94.57	96.25
Bra005741.1-P	Field mustard	nucleus	89.73	91.87
AT5G03150.1	Thale cress	nucleus	89.53	91.85
Bra036013.1-P	Field mustard	nucleus	19.96	65.19
VIT_08s0040g02100.t01	Wine grape	nucleus	52.71	55.28
KRH67672	Soybean	nucleus	50.97	51.17
KRG95964	Soybean	nucleus	50.39	50.98
PGSC0003DMT400004390	Potato	nucleus	42.64	48.25
Solyc09g007550.2.1	Tomato	nucleus, plastid	42.64	47.93
Bra030886.1-P	Field mustard	nucleus	36.82	43.48
Bra036098.1-P	Field mustard	nucleus, plastid	35.08	41.51
GSMUA_Achr7P22720_001	Banana	mitochondrion	22.29	40.93
Bra018535.1-P	Field mustard	plastid	31.98	40.84
Bra015271.1-P	Field mustard	nucleus	37.4	40.04
Solyc10g084180.1.1	Tomato	nucleus	37.4	39.15
PGSC0003DMT400027159	Potato	nucleus	37.21	39.02
Bra033724.1-P	Field mustard	nucleus	35.08	39.01
Bra033840.1-P	Field mustard	nucleus	33.91	38.63
Bra032541.1-P	Field mustard	nucleus	36.63	38.57
PGSC0003DMT400008694	Potato	nucleus, plastid	38.57	37.69
Bra026819.1-P	Field mustard	nucleus	33.91	37.47
Solyc06g075250.2.1	Tomato	nucleus, plastid	38.18	37.31
Bra037151.1-P	Field mustard	nucleus	35.47	37.2
Bra027394.1-P	Field mustard	nucleus	36.24	37.03
Bra026616.1-P	Field mustard	nucleus	36.24	36.59
Bra021510.1-P	Field mustard	nucleus	35.85	36.27
Bra024833.1-P	Field mustard	plastid	35.66	35.87
Bra024834.1-P	Field mustard	nucleus, plastid	38.18	35.69
Bra001523.1-P	Field mustard	nucleus	35.08	35.35
Bra026204.1-P	Field mustard	nucleus, plastid	29.46	33.78
Bra026617.1-P	Field mustard	nucleus	38.57	33.73
Bra040974.1-P	Field mustard	nucleus, plastid	37.98	33.5
Bra026203.1-P	Field mustard	nucleus, plastid	28.88	32.11
Bra010981.1-P	Field mustard	nucleus	21.51	29.37
Bra024771.1-P	Field mustard	nucleus	20.93	28.2
Bra023223.1-P	Field mustard	plastid	25.97	27.92
Bra004283.1-P	Field mustard	nucleus	21.12	26.46
Bra004050.1-P	Field mustard	nucleus	21.12	26.39
Bra026624.1-P	Field mustard	nucleus	22.29	26.26
Bra017432.1-P	Field mustard	nucleus	21.9	25.68
Bra024841.1-P	Field mustard	nucleus	22.09	25.68
Bra038293.1-P	Field mustard	nucleus	34.3	19.98

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra009549	EnsemblPlants:Bra009549.1	EnsemblPlants:Bra009549.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:JKD-like	UniProt:M4CZA2	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002547C2A
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT5G03150 (E=2e-208) JKD | JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding

Coordinates

chrA10:-:17188744..17191539

Molecular Weight (calculated)

56685.5 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.723

Length

516 amino acids

Sequence
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QEQHLHHLQQ HIQDINPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNSAISTTT MTTNLNFGND SHVMNNSNLP HGFVHRGVHH PDINAAISQF GLGFGHDLTG MHPQGLSEMV QMTSSGNHHL
301: FPLSSSSVLP DFSGHHHNQQ FQIPTTSTNP NLTLSSSSTS QQTSASLPSL HQQHQTLKDS SFSPLFSSSS ETKQNKPLSP MSATALLQKA AQMGSTRSNS
401: TTAPSIFAGP TMTSSSSAAS PPPRSSSPMM IQQQLNNNFN TNVPREIHNL APPSSGVTTS SVDNNHRFQS NRSGITPVQQ MGLTRDFLGV SNEHHPHQTG
501: HRPFLPQELA RFAPSG

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.