Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009549.1-P | Field mustard | nucleus | 91.85 | 89.53 |
| CDY11241 | Canola | nucleus | 89.26 | 89.26 |
| CDX80854 | Canola | nucleus | 89.46 | 89.11 |
| Bra005741.1-P | Field mustard | nucleus | 89.26 | 89.09 |
| CDY44344 | Canola | nucleus | 87.28 | 87.8 |
| CDY10404 | Canola | nucleus | 88.47 | 87.77 |
| CDX70328 | Canola | nucleus | 89.66 | 87.74 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 53.08 | 54.27 |
| KRH67672 | Soybean | nucleus | 52.09 | 50.97 |
| KRG95964 | Soybean | nucleus | 51.49 | 50.78 |
| PGSC0003DMT400004390 | Potato | nucleus | 43.94 | 48.46 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 43.74 | 47.93 |
| AT1G55110.2 | Thale cress | nucleus | 37.57 | 41.54 |
| AT3G50700.1 | Thale cress | nucleus | 36.98 | 41.15 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.86 | 40.93 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 32.8 | 40.84 |
| AT3G45260.1 | Thale cress | nucleus | 35.79 | 40.36 |
| Solyc10g084180.1.1 | Tomato | nucleus | 38.77 | 39.55 |
| AT5G44160.1 | Thale cress | nucleus | 36.58 | 39.48 |
| PGSC0003DMT400027159 | Potato | nucleus | 38.57 | 39.43 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 39.76 | 37.88 |
| AT5G66730.1 | Thale cress | nucleus | 37.38 | 37.6 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 39.36 | 37.5 |
| AT1G03840.1 | Thale cress | nucleus | 37.18 | 36.96 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 37.38 | 36.43 |
| AT5G60470.2 | Thale cress | nucleus | 32.41 | 35.51 |
| AT3G13810.2 | Thale cress | nucleus | 36.18 | 35.41 |
| AT1G14580.3 | Thale cress | nucleus | 33.0 | 34.51 |
| AT2G02070.2 | Thale cress | nucleus | 38.17 | 31.89 |
| AT1G25250.3 | Thale cress | nucleus | 22.27 | 29.09 |
| AT2G01940.3 | Thale cress | nucleus | 23.26 | 26.23 |
| AT1G68130.1 | Thale cress | nucleus | 21.07 | 25.3 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | PDB:5B3H | EntrezGene:831919 | ProteinID:AED90561.1 | EMBL:AJ621494 |
| EMBL:AJ630493 | EMBL:AK228895 | ArrayExpress:AT5G03150 | EnsemblPlantsGene:AT5G03150 | RefSeq:AT5G03150 | TAIR:AT5G03150 |
| RefSeq:AT5G03150-TAIR-G | EnsemblPlants:AT5G03150.1 | TAIR:AT5G03150.1 | EMBL:AY568665 | ProteinID:BAB08375.1 | ProteinID:CAB86082.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010075 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0045604 | GO:GO:0046872 |
| GO:GO:0048364 | GO:GO:0051302 | InterPro:IPR013087 | Symbol:JKD | InterPro:JKD-like | RefSeq:NP_195935.2 |
| PFAM:PF00096 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001180 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF42 |
| UniProt:Q700D2 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0000196B4F | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
Coordinates
chr5:+:745421..749028
Molecular Weight (calculated)
55203.9 Da
IEP (calculated)
10.205
GRAVY (calculated)
-0.713
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.