Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70142 | Canola | nucleus | 34.29 | 85.71 |
| Bra030886.1-P | Field mustard | nucleus | 80.88 | 84.21 |
| CDY70938 | Canola | cytosol, nucleus | 49.23 | 82.05 |
| AT3G13810.2 | Thale cress | nucleus | 65.05 | 57.59 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 37.14 | 41.83 |
| AT3G50700.1 | Thale cress | nucleus | 40.66 | 40.93 |
| AT3G45260.1 | Thale cress | nucleus | 38.9 | 39.69 |
| KRH23306 | Soybean | nucleus | 41.76 | 39.58 |
| KRH10015 | Soybean | nucleus | 40.66 | 38.95 |
| KRH47108 | Soybean | nucleus | 42.2 | 38.55 |
| Zm00001d008842_P001 | Maize | nucleus | 39.56 | 38.54 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 41.32 | 38.52 |
| Os01t0195000-01 | Rice | nucleus | 41.1 | 38.4 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 41.76 | 38.23 |
| AT5G66730.1 | Thale cress | nucleus | 41.98 | 38.2 |
| EES02307 | Sorghum | nucleus | 41.76 | 38.15 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 41.54 | 38.1 |
| AT5G44160.1 | Thale cress | nucleus | 38.68 | 37.77 |
| Zm00001d039467_P001 | Maize | nucleus | 41.1 | 37.63 |
| AT5G03150.1 | Thale cress | nucleus | 41.54 | 37.57 |
| AT1G03840.1 | Thale cress | nucleus | 41.32 | 37.15 |
| KRH44134 | Soybean | nucleus | 41.76 | 35.85 |
| AT5G60470.2 | Thale cress | nucleus | 35.82 | 35.51 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 39.56 | 34.88 |
| PGSC0003DMT400012504 | Potato | nucleus | 38.46 | 34.86 |
| Solyc06g062670.2.1 | Tomato | nucleus | 38.46 | 34.79 |
| PGSC0003DMT400006385 | Potato | nucleus | 40.88 | 34.38 |
| Solyc03g121660.2.1 | Tomato | nucleus | 40.88 | 34.32 |
| AT1G14580.3 | Thale cress | nucleus | 35.38 | 33.47 |
| AT2G02070.2 | Thale cress | nucleus | 41.32 | 31.23 |
| AT1G25250.3 | Thale cress | nucleus | 23.96 | 28.31 |
| AT2G01940.3 | Thale cress | nucleus | 26.81 | 27.35 |
| AT1G68130.1 | Thale cress | nucleus | 23.96 | 26.01 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:841954 | UniProt:A0A178WJ89 | ProteinID:AAG50836.1 | ProteinID:AEE33185.1 |
| EMBL:AK227194 | ProteinID:ANM60332.1 | ProteinID:ANM60333.1 | ArrayExpress:AT1G55110 | EnsemblPlantsGene:AT1G55110 | RefSeq:AT1G55110 |
| TAIR:AT1G55110 | RefSeq:AT1G55110-TAIR-G | EnsemblPlants:AT1G55110.2 | EMBL:AY090998 | EMBL:AY150421 | Unigene:At.37112 |
| Symbol:AtIDD7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_001322628.1 | RefSeq:NP_001322629.1 | RefSeq:NP_175907.2 |
| ProteinID:OAP17162.1 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF24 |
| UniProt:Q8H1F5 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00000ADA8A | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
Coordinates
chr1:-:20560258..20563269
Molecular Weight (calculated)
50905.5 Da
IEP (calculated)
8.330
GRAVY (calculated)
-0.924
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.