Factsheet for PGSC0003DMT400012504

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062670.2.1	Tomato	nucleus	96.41	96.22
CDY70142	Canola	nucleus	20.52	56.59
KRH47108	Soybean	nucleus	44.02	44.38
PGSC0003DMT400021189	Potato	nucleus	41.24	44.23
KRH10015	Soybean	nucleus	41.83	44.21
KRH23306	Soybean	nucleus	41.43	43.33
PGSC0003DMT400006385	Potato	nucleus	46.02	42.7
KRH44134	Soybean	nucleus	44.22	41.89
VIT_09s0002g02300.t01	Wine grape	nucleus	43.63	41.17
Zm00001d008842_P001	Maize	nucleus	37.05	39.83
Bra030886.1-P	Field mustard	nucleus	34.46	39.59
PGSC0003DMT400063501	Potato	nucleus	28.29	39.44
PGSC0003DMT400004390	Potato	nucleus	35.26	38.82
Zm00001d039467_P001	Maize	nucleus	38.25	38.63
EES02307	Sorghum	nucleus	38.25	38.55
AT1G55110.2	Thale cress	nucleus	34.86	38.46
Os01t0195000-01	Rice	nucleus	37.05	38.19
TraesCS3D01G107300.1	Wheat	nucleus	36.45	37.5
TraesCS3A01G105100.1	Wheat	nucleus	36.85	37.3
TraesCS3B01G123600.1	Wheat	nucleus	36.45	36.82
PGSC0003DMT400027159	Potato	nucleus	36.06	36.79
PGSC0003DMT400049788	Potato	nucleus	34.86	36.69
PGSC0003DMT400024272	Potato	nucleus	35.86	36.36
PGSC0003DMT400020945	Potato	nucleus	35.86	35.93
PGSC0003DMT400013174	Potato	nucleus	35.86	35.57
PGSC0003DMT400008694	Potato	nucleus, plastid	37.05	35.23
PGSC0003DMT400033039	Potato	nucleus, plastid	36.45	34.86
PGSC0003DMT400075837	Potato	nucleus	35.86	34.75
PGSC0003DMT400029550	Potato	nucleus	29.28	32.45
PGSC0003DMT400069306	Potato	nucleus	23.71	28.95
PGSC0003DMT400079735	Potato	nucleus, plastid	24.3	27.92
CDY70938	Canola	cytosol, nucleus	13.74	25.27
PGSC0003DMT400040064	Potato	nucleus	34.66	23.64

Protein Annotations

EntrezGene:102587191	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CAA57772	ProteinID:CAA57772.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	UniProt:M1A1B7	PFAM:PF12171
EnsemblPlantsGene:PGSC0003DMG400004882	PGSC:PGSC0003DMG400004882	EnsemblPlants:PGSC0003DMT400012504	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF59	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002956C9B	EMBL:X82328	RefSeq:XP_006357382.1
RefSeq:XP_015168881.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

DNA/RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004882]

Coordinates

chr6:+:48716845..48720067

Molecular Weight (calculated)

56153.9 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.662

Length

502 amino acids

Sequence
(BLAST)

001: MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK
101: RENKEVVRKK VYICPESSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT IFSRRDSFIT HRAFCETLAM
201: ESARSVINGR NPTIFSPQLN LQFQQPHFFN SHEQIQATTF PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINHGPSPL SNFSSSSIFP ATTRLDQQYT
301: QSGHKDLNLH HPNPNLRGPT LGYDSTGESG AVSPVHISAT ALLQKAAQFG ATISNKASAV TATVAYTGTV KIPHNTHVSV TSTDSATKQT HQKLSSREDL
401: TTITGPANIS GIMTSFSNGF DGSTMFEDAI LFGGFNNLNS KKEDEEEDQQ LYFNGSMNEE DHILTKDFLG LKPLSHTDDI FNIAALVNTE PHHFKNHKTW
501: QS

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.