Factsheet for PGSC0003DMT400069306

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072360.2.1	Tomato	nucleus	87.1	91.33
PGSC0003DMT400079735	Potato	nucleus, plastid	67.4	63.39
KRH60588	Soybean	nucleus	57.66	59.25
KRH41885	Soybean	nucleus	54.5	58.95
VIT_17s0000g01870.t01	Wine grape	nucleus	63.02	56.92
KRH38986	Soybean	nucleus	64.23	55.7
KRH48724	Soybean	nucleus	64.48	54.87
GSMUA_Achr7P18610_001	Banana	nucleus	48.42	52.65
GSMUA_Achr5P23130_001	Banana	nucleus	47.45	51.32
GSMUA_Achr6P02490_001	Banana	nucleus	45.74	50.81
GSMUA_Achr10P...	Banana	nucleus	45.99	49.35
Zm00001d005871_P002	Maize	nucleus	51.34	47.85
GSMUA_Achr3P20220_001	Banana	nucleus	48.91	47.41
GSMUA_Achr10P...	Banana	nucleus	45.99	47.37
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	43.8	47.0
TraesCS4B01G230800.1	Wheat	nucleus, plastid	44.77	45.43
TraesCS5D01G240600.1	Wheat	nucleus	54.01	45.21
TraesCS5A01G233700.1	Wheat	nucleus	53.53	44.81
TraesCS5B01G232200.1	Wheat	nucleus	53.53	44.72
TraesCS4D01G232000.1	Wheat	nucleus, plastid	44.77	44.44
TraesCS4A01G074700.1	Wheat	nucleus, plastid	44.53	44.1
HORVU4Hr1G064740.2	Barley	nucleus, plastid	45.01	43.53
Zm00001d020683_P001	Maize	nucleus	52.31	43.26
Os03t0237250-01	Rice	plastid	45.26	42.47
Zm00001d047976_P001	Maize	nucleus, plastid	46.23	42.41
Zm00001d028361_P001	Maize	nucleus, plastid	46.47	42.26
EER96827	Sorghum	nucleus	51.09	42.08
Os08t0467100-01	Rice	nucleus	53.04	40.9
KXG39813	Sorghum	nucleus, plastid	45.5	40.74
Zm00001d031759_P001	Maize	nucleus	51.34	40.73
EES13982	Sorghum	nucleus	51.34	39.37
PGSC0003DMT400004390	Potato	nucleus	29.93	26.97
PGSC0003DMT400063501	Potato	nucleus	22.63	25.83
PGSC0003DMT400027159	Potato	nucleus	30.66	25.61
PGSC0003DMT400021189	Potato	nucleus	28.95	25.43
PGSC0003DMT400013174	Potato	nucleus	30.17	24.51
PGSC0003DMT400020945	Potato	nucleus	29.44	24.15
PGSC0003DMT400033039	Potato	nucleus, plastid	30.66	24.0
PGSC0003DMT400008694	Potato	nucleus, plastid	30.66	23.86
PGSC0003DMT400012504	Potato	nucleus	28.95	23.71
PGSC0003DMT400049788	Potato	nucleus	27.49	23.69
PGSC0003DMT400024272	Potato	nucleus	28.22	23.43
PGSC0003DMT400075837	Potato	nucleus	28.47	22.59
PGSC0003DMT400006385	Potato	nucleus	29.44	22.37
PGSC0003DMT400029550	Potato	nucleus	24.57	22.3
PGSC0003DMT400040064	Potato	nucleus	30.9	17.26

Protein Annotations

EntrezGene:102593666	MapMan:15.5.15	Gene3D:3.30.160.60	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	UniProt:M1CK94	PFAM:PF12874	EnsemblPlantsGene:PGSC0003DMG400026959
PGSC:PGSC0003DMG400026959	EnsemblPlants:PGSC0003DMT400069306	ScanProsite:PS00028	ScanProsite:PS01359	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF43	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000294F617	RefSeq:XP_006347364.1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

C3HL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026959]

Coordinates

chr6:-:53119362..53121860

Molecular Weight (calculated)

46632.1 Da

IEP (calculated)

9.389

GRAVY (calculated)

-0.835

Length

411 amino acids

Sequence
(BLAST)

001: MFNSSSDPFM TSSENNGNNC INNNKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYICEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV KKRVFVCPEP
101: TCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCEKCNKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDLCS FGSLRSESQS LIQLPSAPCL
201: SRTASSPSPS SDHTNNLITT TNTVPWPNFI MKTPNAIIKK HNLELQLLTT TTTTTSPSSP FDVSVSSKSR DDHNLQLSIG SSDLSEKNES ENNNNDTHRS
301: RNGVEGLRQA LAEKVYAEEA RKKGRREIEL AEEELGNARR IRRQAQMELE KAQVLKEEAI RKINFTLSQI TCHACKQKFQ GKRITTTSIV PNSHHDQNIH
401: LKYSTCPTSL H

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.