Factsheet for VIT_17s0000g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079735	Potato	nucleus, plastid	66.59	69.34
VIT_01s0011g06400.t01	Wine grape	nucleus	64.18	68.71
Solyc03g098070.2.1	Tomato	nucleus	54.07	67.58
KRH38986	Soybean	nucleus	70.11	67.3
KRH60588	Soybean	nucleus	58.9	67.0
KRH41885	Soybean	nucleus	55.16	66.05
KRH48724	Soybean	nucleus	69.89	65.84
Solyc06g072360.2.1	Tomato	nucleus	55.6	64.54
PGSC0003DMT400069306	Potato	nucleus	56.92	63.02
GSMUA_Achr7P18610_001	Banana	nucleus	50.77	61.11
GSMUA_Achr5P23130_001	Banana	nucleus	50.55	60.53
GSMUA_Achr6P02490_001	Banana	nucleus	47.25	58.11
GSMUA_Achr10P...	Banana	nucleus	48.13	57.18
GSMUA_Achr3P20220_001	Banana	nucleus	52.31	56.13
GSMUA_Achr10P...	Banana	nucleus	46.37	52.88
Zm00001d005871_P002	Maize	nucleus	50.33	51.93
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	42.86	50.91
TraesCS5B01G232200.1	Wheat	nucleus	53.41	49.39
TraesCS5A01G233700.1	Wheat	nucleus	52.97	49.08
TraesCS5D01G240600.1	Wheat	nucleus	52.75	48.88
Zm00001d020683_P001	Maize	nucleus	52.53	48.09
EER96827	Sorghum	nucleus	52.31	47.7
Zm00001d031759_P001	Maize	nucleus	53.19	46.72
TraesCS4B01G230800.1	Wheat	nucleus, plastid	41.54	46.67
Os03t0237250-01	Rice	plastid	44.4	46.12
TraesCS4D01G232000.1	Wheat	nucleus, plastid	41.76	45.89
TraesCS4A01G074700.1	Wheat	nucleus, plastid	41.54	45.54
HORVU4Hr1G064740.2	Barley	nucleus, plastid	42.42	45.41
Os08t0467100-01	Rice	nucleus	53.19	45.4
EES13982	Sorghum	nucleus	53.19	45.15
Zm00001d028361_P001	Maize	nucleus, plastid	43.3	43.58
Zm00001d047976_P001	Maize	nucleus, plastid	42.86	43.53
KXG39813	Sorghum	nucleus, plastid	43.52	43.14
VIT_12s0028g03030.t01	Wine grape	nucleus	26.81	28.57
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	26.59	27.31
VIT_04s0023g01430.t01	Wine grape	nucleus	29.89	26.88
VIT_09s0054g01820.t01	Wine grape	nucleus	23.08	26.65
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	28.13	25.81
VIT_08s0040g02100.t01	Wine grape	nucleus	26.37	24.39
VIT_09s0002g02300.t01	Wine grape	nucleus	28.13	24.06
VIT_04s0008g01160.t01	Wine grape	nucleus	27.03	23.38
VIT_06s0004g03070.t01	Wine grape	nucleus	25.05	22.85
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	26.59	22.79
VIT_01s0010g02100.t01	Wine grape	nucleus	27.25	21.68
VIT_07s0104g01620.t01	Wine grape	nucleus	25.05	19.06
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	27.69	19.06

Protein Annotations

EntrezGene:100260988	wikigene:100260988	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB43310	ProteinID:CCB43310.1
ncoils:Coil	UniProt:F6GSS5	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	EntrezGene:LOC100260988	wikigene:LOC100260988	ScanProsite:PS00028	ScanProsite:PS01359
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF43	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC64818
UniParc:UPI0002109780	ArrayExpress:VIT_17s0000g01870	EnsemblPlantsGene:VIT_17s0000g01870	EnsemblPlants:VIT_17s0000g01870.t01	unigene:Vvi.12549	RefSeq:XP_002283220
RefSeq:XP_002283220.2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:1436683..1439286

Molecular Weight (calculated)

51140.2 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.829

Length

455 amino acids

Sequence
(BLAST)

001: MLGCSNSDNN NNSSAEPFAS LENGSNSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYICE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC
101: PEPSCLHHDP CHALGDLVGI KKHFRRKHSN HKQWVCEKCN KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD ACNMGHLRPE SQLLQPAACL
201: SRTASSPSPS SETNFSVPPW SGLMTPRPVD SIFLTSDGDN NNNNPPKKAH YHNLELQLLT TPNPLVALAS PKADENHSTQ LQLSIGSSDF NEKNESSIIN
301: LINKEYSAPA RCPRECNTSE KATFGAARLK EEAREQLRLA MEEKVYAEEA RQQAKRQIEL ADKEFTHAKR IRQQAQAELD KAQALKEHAR KQINSTILQI
401: TCHACKQQFR TRTAGNVAPP DENSLVLSYM SSAITEGEVV ENNHHRSVRA KTTNP

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.