Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96409 | Soybean | nucleus | 58.7 | 65.61 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 55.52 | 63.85 |
| KRH68150 | Soybean | nucleus | 47.99 | 63.36 |
| PGSC0003DMT400029550 | Potato | nucleus | 47.99 | 63.36 |
| KRH71547 | Soybean | nucleus | 45.65 | 62.76 |
| GSMUA_Achr8P10040_001 | Banana | nucleus | 32.78 | 43.85 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 30.6 | 42.86 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 34.95 | 41.3 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 36.62 | 41.24 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 30.43 | 41.08 |
| VIT_18s0001g12220.t01 | Wine grape | nucleus, plastid | 33.95 | 40.93 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 33.44 | 40.65 |
| GSMUA_Achr11P... | Banana | nucleus | 27.76 | 40.1 |
| VIT_06s0004g03070.t01 | Wine grape | nucleus | 31.61 | 37.88 |
| VIT_04s0008g01160.t01 | Wine grape | nucleus | 32.94 | 37.45 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 35.79 | 37.41 |
| Os01t0935000-01 | Rice | nucleus | 29.43 | 36.97 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 23.91 | 36.29 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 30.6 | 35.95 |
| EES04172 | Sorghum | nucleus | 31.1 | 35.77 |
| Zm00001d042202_P001 | Maize | nucleus | 30.94 | 35.24 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 31.27 | 35.15 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 29.77 | 34.83 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 33.61 | 30.41 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 19.9 | 28.0 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 19.06 | 25.05 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CCB56754 | ProteinID:CCB56754.1 | UniProt:F6HPZ8 | EMBL:FN596005 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | PFAM:PF00096 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF34 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0002108576 |
| ArrayExpress:VIT_07s0104g01620 | EnsemblPlantsGene:VIT_07s0104g01620 | EnsemblPlants:VIT_07s0104g01620.t01 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
No Description!
Coordinates
chr7:-:2619353..2622314
Molecular Weight (calculated)
65198.4 Da
IEP (calculated)
8.715
GRAVY (calculated)
-0.703
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNITGDDGS FSSGNTGEEV QQQQQQQQPQ NHLHGSGLGP NSSTVTNSNG SSSSQQQQQQ QQQQPIKKKR NLPGTPGKSK RPMNSIMFFF FLEDASNYSI
101: LCESDPNAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTTNEI RKRVYICPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW
201: KCDKCSKKYA VQSDWKAHSK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNQ GLMANMGSNL QSQMPELMSS MPLNSNSSPS VGISEFNSYD
301: PKNPLKSLPQ DLVPMPFKSP NMSGGMFSSS SGTLFGGPRS ISSSSSGLQL SSNSSSGFNY LQDGKNGTQL SGSANMSATA LLQKAAQMGA TASNSINSPM
401: MQKSFVSSMA APELSSIRPS PYVTIQQQTN SYDHHFQSQP DQSPLVGING GGLPSQFLQK GPPEITPLFQ TVSGSASMNN DIGMFGNVFI GGDQNSPFLK
501: NMENEDSSST SSLAQGRTVM ARSATGPSRF GGNGEGKDVT TLDLLGVGGS RPVNLQEQQQ RLELEAMSQH RMQAMTTFQQ QLSHGEPAIE QGLYGIYE
101: LCESDPNAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTTNEI RKRVYICPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW
201: KCDKCSKKYA VQSDWKAHSK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNQ GLMANMGSNL QSQMPELMSS MPLNSNSSPS VGISEFNSYD
301: PKNPLKSLPQ DLVPMPFKSP NMSGGMFSSS SGTLFGGPRS ISSSSSGLQL SSNSSSGFNY LQDGKNGTQL SGSANMSATA LLQKAAQMGA TASNSINSPM
401: MQKSFVSSMA APELSSIRPS PYVTIQQQTN SYDHHFQSQP DQSPLVGING GGLPSQFLQK GPPEITPLFQ TVSGSASMNN DIGMFGNVFI GGDQNSPFLK
501: NMENEDSSST SSLAQGRTVM ARSATGPSRF GGNGEGKDVT TLDLLGVGGS RPVNLQEQQQ RLELEAMSQH RMQAMTTFQQ QLSHGEPAIE QGLYGIYE
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.