Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04172 | Sorghum | nucleus | 78.29 | 79.04 |
| Os01t0935000-01 | Rice | nucleus | 58.1 | 64.08 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 57.33 | 59.14 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 57.52 | 59.1 |
| GSMUA_Achr11P... | Banana | nucleus | 39.62 | 50.24 |
| Zm00001d039254_P001 | Maize | nucleus | 30.86 | 45.76 |
| Zm00001d009030_P002 | Maize | nucleus | 32.95 | 38.7 |
| Zm00001d008842_P001 | Maize | nucleus | 33.71 | 37.9 |
| PGSC0003DMT400063501 | Potato | nucleus | 25.52 | 37.22 |
| Zm00001d011223_P002 | Maize | nucleus | 32.95 | 36.97 |
| Solyc01g099340.2.1 | Tomato | nucleus | 29.71 | 36.79 |
| Zm00001d044261_P001 | Maize | nucleus | 33.14 | 36.25 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 36.19 | 35.78 |
| Zm00001d039467_P001 | Maize | nucleus | 33.71 | 35.61 |
| KRG96409 | Soybean | nucleus | 35.81 | 35.14 |
| Zm00001d032922_P001 | Maize | nucleus | 29.14 | 35.09 |
| KRH68532 | Soybean | nucleus | 34.1 | 34.96 |
| KRG92880 | Soybean | nucleus | 35.05 | 34.78 |
| KRG96824 | Soybean | nucleus | 33.52 | 34.71 |
| KRH71547 | Soybean | nucleus | 28.76 | 34.71 |
| KRH68150 | Soybean | nucleus | 29.9 | 34.66 |
| KRH33908 | Soybean | nucleus, plastid | 35.24 | 34.64 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 33.14 | 33.46 |
| Zm00001d021403_P001 | Maize | nucleus | 30.48 | 33.06 |
| Zm00001d028139_P001 | Maize | nucleus | 33.9 | 33.02 |
| PGSC0003DMT400029550 | Potato | nucleus | 28.38 | 32.89 |
| Zm00001d016632_P001 | Maize | nucleus | 30.1 | 31.1 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 35.24 | 30.94 |
| Zm00001d017560_P001 | Maize | nucleus | 32.95 | 29.73 |
| Zm00001d026113_P006 | Maize | nucleus | 33.52 | 29.38 |
| Zm00001d005871_P002 | Maize | nucleus | 24.0 | 28.57 |
| Zm00001d031992_P001 | Maize | nucleus | 32.76 | 28.43 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 24.19 | 28.35 |
| Zm00001d002654_P003 | Maize | nucleus | 33.52 | 27.8 |
| Zm00001d006319_P001 | Maize | nucleus | 29.52 | 27.73 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 23.81 | 27.65 |
| Zm00001d020683_P001 | Maize | nucleus | 24.38 | 25.75 |
| Zm00001d031759_P001 | Maize | nucleus | 24.57 | 24.9 |
| Zm00001d006682_P001 | Maize | nucleus | 32.57 | 23.05 |
| Zm00001d021932_P001 | Maize | nucleus | 32.57 | 20.98 |
Protein Annotations
| EMBL:BT066652 | EnsemblPlants:Zm00001d042202_P001 | EnsemblPlants:Zm00001d042202_T001 | EnsemblPlantsGene:Zm00001d042202 | EntrezGene:100383235 | Gene3D:3.30.160.60 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| PANTHER:PTHR10593 | PANTHER:PTHR10593:SF44 | PFscan:PS50157 | ProteinID:ONM34789.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI000195C917 | UniProt:C0PED3 | MapMan:15.5.15 | : | : |
Description
Protein indeterminate-domain 11
Coordinates
chr3:+:156030658..156033522
Molecular Weight (calculated)
55302.0 Da
IEP (calculated)
8.014
GRAVY (calculated)
-0.525
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAAGRECT GGGGSRSSSF SSVSNASPTE VEEEFLRYHT NPLLGGPTTE MRDDGGVTGG PSDQPPLTVK KKRSLPGTPD PSAEVIALSP RTLMATNRFV
101: CEICHKGFQR DQNLQLHRRG HNLPWKLRQR GGPGGGADGG GPPRKRVYVC PEASCVHHNP ARALGDLTGI KKHYCRKHGE KKWKCERCAK RYAVHSDWKA
201: HAKVCGTREY KCDCGTVFSR RDSFVTHRAF CDALAQENNK LSQPMNMATV ASALQGQAPH HHHHHHLALP SSSQAADDHD NAAGDDDNDG DDFAIDTKSP
301: QLRMLPAMSD SAAADNNNNN NPLFLPPPSM AGCMLSSLQQ GGAARPAPPP PASYFSGGGK AAGLYDPSAS SPASMSATAL LQKAAEMGAT AGGYGAGAGF
401: STVGFGPMMA GPSVMGLFGP VKTPAALSLE VYDGMPLGPT QLVGLDVGRL LPGQHHLYGS SHGHGVGIGS MTRAIGSLMH GGGQQAEQHR RPDDDTRVVD
501: YLGVDDQRTC FSGVSPFGPH IGPWA
101: CEICHKGFQR DQNLQLHRRG HNLPWKLRQR GGPGGGADGG GPPRKRVYVC PEASCVHHNP ARALGDLTGI KKHYCRKHGE KKWKCERCAK RYAVHSDWKA
201: HAKVCGTREY KCDCGTVFSR RDSFVTHRAF CDALAQENNK LSQPMNMATV ASALQGQAPH HHHHHHLALP SSSQAADDHD NAAGDDDNDG DDFAIDTKSP
301: QLRMLPAMSD SAAADNNNNN NPLFLPPPSM AGCMLSSLQQ GGAARPAPPP PASYFSGGGK AAGLYDPSAS SPASMSATAL LQKAAEMGAT AGGYGAGAGF
401: STVGFGPMMA GPSVMGLFGP VKTPAALSLE VYDGMPLGPT QLVGLDVGRL LPGQHHLYGS SHGHGVGIGS MTRAIGSLMH GGGQQAEQHR RPDDDTRVVD
501: YLGVDDQRTC FSGVSPFGPH IGPWA
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.