CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33908	Soybean	nucleus, plastid	94.14	93.26
KRH68532	Soybean	nucleus	71.46	73.83
KRG96824	Soybean	nucleus	69.57	72.58
KRH67268	Soybean	nucleus	29.11	59.0
GSMUA_Achr8P10040_001	Banana	nucleus	39.13	46.31
KRG89168	Soybean	nucleus, plastid	29.49	44.83
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	44.05	43.88
KRH15560	Soybean	nucleus	33.27	43.14
KRH10015	Soybean	nucleus	38.0	42.32
KRH23306	Soybean	nucleus	38.0	41.88
KRH47108	Soybean	nucleus	38.75	41.16
KRH22332	Soybean	nucleus	36.86	41.14
KRH05443	Soybean	nucleus	34.22	41.14
KRH49655	Soybean	nucleus	27.98	40.88
KRH55868	Soybean	nucleus	36.48	40.72
KRH25657	Soybean	nucleus	36.11	40.55
GSMUA_Achr11P...	Banana	nucleus	31.57	40.34
KRG95590	Soybean	nucleus	34.78	40.0
KRH51873	Soybean	nucleus	35.35	39.87
KRG96409	Soybean	nucleus	40.08	39.63
KRH61193	Soybean	nucleus	35.35	39.53
KRH26995	Soybean	nucleus	35.73	39.38
KRH68150	Soybean	nucleus	33.65	39.29
KRH71370	Soybean	nucleus	33.84	39.08
KRH44134	Soybean	nucleus	39.13	39.06
KRH32064	Soybean	nucleus	34.03	38.88
KRH08298	Soybean	nucleus	37.24	38.55
KRH76829	Soybean	nucleus	37.62	38.49
KRH69941	Soybean	nucleus, plastid	37.81	38.1
KRH69942	Soybean	nucleus	37.81	38.1
KRH71547	Soybean	nucleus	30.81	37.47
KRG90705	Soybean	nucleus	39.7	37.04
KRH36039	Soybean	nucleus	39.7	36.78
Os01t0935000-01	Rice	nucleus	32.7	36.34
EES04172	Sorghum	nucleus	35.35	35.96
KRH49485	Soybean	nucleus	36.86	35.91
KRH49489	Soybean	nucleus, plastid	35.92	35.65
KRG89167	Soybean	nucleus, plastid	36.86	35.52
KRG95964	Soybean	nucleus	33.84	35.1
Zm00001d042202_P001	Maize	nucleus	34.78	35.05
KRH19850	Soybean	nucleus	34.59	34.86
TraesCS3B01G497200.1	Wheat	nucleus	33.65	34.83
TraesCS3D01G449900.1	Wheat	nucleus	33.46	34.77
KRH22919	Soybean	nucleus	33.46	34.77
KRH32442	Soybean	nucleus	34.78	34.59
KRH67672	Soybean	nucleus	33.27	34.24
KRH34792	Soybean	nucleus	35.54	33.87
KRG91985	Soybean	nucleus	35.73	33.75
KRH24905	Soybean	nucleus	34.4	33.64
KRH26399	Soybean	nucleus	31.76	33.6
KRG89014	Soybean	nucleus	35.16	32.4
KRH41885	Soybean	nucleus	21.55	30.0
KRH60588	Soybean	nucleus	22.12	29.25
KRH58582	Soybean	nucleus	22.68	27.27
KRH42485	Soybean	nucleus	22.31	26.11
KRH38986	Soybean	nucleus	22.5	25.11
KRH48724	Soybean	nucleus	22.12	24.22

Protein Annotations

EntrezGene:100785295	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02012769	EnsemblPlantsGene:GLYMA_20G235100	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	UniProt:I1NJ02	InterPro:IPR013087	EnsemblPlants:KRG92880
ProteinID:KRG92880	ProteinID:KRG92880.1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF59	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000233DDC7	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46778410..46782377

Molecular Weight (calculated)

56757.4 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.635

Length

529 amino acids

Sequence
(BLAST)

001: MSNITSCDSG SFSTENTRED AVVKQQPEIL GQFHSPHSHT STTTTTNNSN GSNTDSQSPA PVKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG
101: FQRDQNLQLH RRGHNLPWKL KQRTSTEIRK RVYVCPEPSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG
201: TIFSRRDSFI THRAFCDALA EENNKANEGQ LPKIGPNLQC QQIPNLVSSS LPINTNIVPN PQMGGTSEFN HADHKHPLSL PHELMPMPAQ KSFNNMAAGT
301: TVFTRSLSST SSPSLQLSSN MFEENGLHLA AGSPHMSATA LLQKAAQMGA TVTEKTFVTN MAPPSFGVLQ QHHQQPNGQP FMNQYMHSGQ QQQDVNISAQ
401: YNSFGANGMG GGSVGMNGVD MFNAILDQSK ALSKIMEQNN RSSSGGPTNG GSNSSAINVA GSKGGSGDVM TLDFLGIGGG GGGGGGGGDA HGNFYGGAQQ
501: GETGAPDVVW RNWSSKNAGF ESFSATSSI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.