CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26399	Soybean	nucleus	87.43	89.0
KRH67268	Soybean	nucleus	29.27	57.09
KRH24905	Soybean	nucleus	55.6	52.31
KRG89014	Soybean	nucleus	56.78	50.35
KRG89168	Soybean	nucleus, plastid	29.67	43.39
KRH47108	Soybean	nucleus	35.95	36.75
KRH49655	Soybean	nucleus	26.13	36.74
KRH25657	Soybean	nucleus	33.79	36.52
KRH22332	Soybean	nucleus	33.99	36.5
KRH55868	Soybean	nucleus	33.79	36.29
KRH15560	Soybean	nucleus	29.08	36.27
KRH10015	Soybean	nucleus	33.6	36.0
KRH05443	Soybean	nucleus	30.84	35.68
KRG95590	Soybean	nucleus	31.83	35.22
KRH26995	Soybean	nucleus	33.2	35.21
KRH23306	Soybean	nucleus	33.2	35.21
KRH51873	Soybean	nucleus	31.83	34.54
KRH44134	Soybean	nucleus	35.95	34.53
KRG96824	Soybean	nucleus	34.38	34.52
KRH61193	Soybean	nucleus	31.83	34.25
KRH32064	Soybean	nucleus	31.04	34.13
KRH71370	Soybean	nucleus	30.65	34.06
KRH76829	Soybean	nucleus	34.38	33.85
KRH68532	Soybean	nucleus	33.79	33.59
KRH33908	Soybean	nucleus, plastid	35.17	33.52
KRH08298	Soybean	nucleus	33.6	33.46
KRG92880	Soybean	nucleus	34.77	33.46
KRG95964	Soybean	nucleus	33.4	33.33
KRH67672	Soybean	nucleus	33.6	33.27
KRH69942	Soybean	nucleus	33.99	32.95
KRH69941	Soybean	nucleus, plastid	33.99	32.95
KRH49489	Soybean	nucleus, plastid	34.18	32.65
KRH19850	Soybean	nucleus	33.4	32.38
KRG90705	Soybean	nucleus	35.56	31.92
KRH32442	Soybean	nucleus	33.2	31.77
KRH36039	Soybean	nucleus	35.36	31.52
KRH71547	Soybean	nucleus	26.92	31.49
KRH49485	Soybean	nucleus	33.6	31.49
KRG96409	Soybean	nucleus	32.61	31.03
KRH68150	Soybean	nucleus	27.31	30.68
KRH34792	Soybean	nucleus	33.2	30.45
KRG89167	Soybean	nucleus, plastid	32.61	30.24
KRG91985	Soybean	nucleus	33.01	30.0
KRH60588	Soybean	nucleus	22.79	29.0
KRH41885	Soybean	nucleus	21.41	28.68
KRH58582	Soybean	nucleus	23.58	27.27
KRH42485	Soybean	nucleus	23.18	26.11
KRH38986	Soybean	nucleus	22.99	24.68
KRH48724	Soybean	nucleus	22.59	23.81

Protein Annotations

EntrezGene:100811687	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02008441	EnsemblPlantsGene:GLYMA_13G327500	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0046872	UniProt:I1M4M2	InterPro:IPR000048
InterPro:IPR013087	InterPro:IQ_motif_EF-hand-BS	InterPro:JKD-like	ProteinID:KRH22917.1	ProteinID:KRH22918.1	EnsemblPlants:KRH22919
ProteinID:KRH22919	ProteinID:KRH22919.1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50096	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000233AC7B	InterPro:Znf_C2H2_jaz
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:42214586..42217606

Molecular Weight (calculated)

57069.0 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.798

Length

509 amino acids

Sequence
(BLAST)

001: MMSQEAISVP SNNLRDPSVQ LHEPNSNSNS NPNNPNPNSL KRKRSLPGTP DPNAEVIALS PKSLMATNRF ICEVCNKGFQ RDQNLQLHRR GHNLPWKLRQ
101: RNKEEVVKKK VYVCPEKSCV HHDPCRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHNKICG TRQYKCDCGT IFSRKDSFVT HGAFCDAMAE
201: QNARLPAVLS NLGSEILMNA AQGPRVMPQA LQLHGFHNSE FGGPGSEPYM GNFADVNHVE HNKLRMPLWL DQTNNIPLQL NHHHHHHPLS VSSNNSSSLF
301: SPGTTLAEAN NMFGTSSSSQ GQWLNYRYHP EASFTHANVS IPHGLKLEQE ENKGDLSHSV SSLYQSHMEP TRMSGGNNNL AFDNSNFGLL DPNMSSTSSN
401: NNNRYNNNVV EIQKLFKQGN QAVENFNHMV NSQASTNNII GGGFSLSSTK GLEHMVMPRI EEWESGEPEI MQKQQLRSST SNATEEHLTK DFMGIGPVIN
501: LQSQFRGHY

Best Arabidopsis Sequence Match ( AT3G45260.1 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.