CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32442	Soybean	nucleus	92.38	91.17
KRG95964	Soybean	nucleus	68.19	70.2
KRH67672	Soybean	nucleus	68.57	70.04
VIT_08s0040g02100.t01	Wine grape	nucleus	58.86	62.8
KRH67268	Soybean	nucleus	29.71	59.77
PGSC0003DMT400004390	Potato	nucleus	48.95	56.36
Solyc09g007550.2.1	Tomato	nucleus, plastid	48.57	55.56
KRG89168	Soybean	nucleus, plastid	31.43	47.41
KRH15560	Soybean	nucleus	34.1	43.87
Solyc10g084180.1.1	Tomato	nucleus	40.0	42.6
PGSC0003DMT400027159	Potato	nucleus	39.81	42.48
KRH25657	Soybean	nucleus	36.76	40.98
KRH22332	Soybean	nucleus	36.95	40.93
KRH05443	Soybean	nucleus	34.29	40.91
KRH71370	Soybean	nucleus	35.62	40.83
KRH32064	Soybean	nucleus	36.0	40.82
KRH55868	Soybean	nucleus	36.57	40.51
KRG95590	Soybean	nucleus	35.43	40.43
Solyc06g075250.2.1	Tomato	nucleus, plastid	40.38	40.15
KRH51873	Soybean	nucleus	35.81	40.09
KRH49655	Soybean	nucleus	27.62	40.06
KRH10015	Soybean	nucleus	36.19	40.0
PGSC0003DMT400008694	Potato	nucleus, plastid	40.19	39.96
KRH76829	Soybean	nucleus	39.24	39.85
KRH26995	Soybean	nucleus	35.81	39.17
KRH47108	Soybean	nucleus	37.14	39.16
KRH23306	Soybean	nucleus	35.62	38.96
KRH61193	Soybean	nucleus	34.86	38.69
KRH71547	Soybean	nucleus	32.0	38.62
KRH49489	Soybean	nucleus, plastid	38.1	37.52
KRG96409	Soybean	nucleus	38.1	37.38
KRH08298	Soybean	nucleus	36.38	37.38
KRH44134	Soybean	nucleus	37.71	37.36
KRH69941	Soybean	nucleus, plastid	37.14	37.14
KRH69942	Soybean	nucleus	37.14	37.14
KRH68150	Soybean	nucleus	32.0	37.09
KRH24905	Soybean	nucleus	37.33	36.23
KRG89167	Soybean	nucleus, plastid	37.14	35.52
KRG96824	Soybean	nucleus	34.1	35.31
KRH49485	Soybean	nucleus	36.38	35.17
KRH26399	Soybean	nucleus	33.33	35.0
KRH34792	Soybean	nucleus	36.95	34.95
KRG90705	Soybean	nucleus	37.71	34.92
KRH36039	Soybean	nucleus	37.71	34.68
KRH33908	Soybean	nucleus, plastid	35.24	34.64
KRG92880	Soybean	nucleus	34.86	34.59
KRH68532	Soybean	nucleus	33.71	34.57
KRG89014	Soybean	nucleus	37.71	34.49
KRG91985	Soybean	nucleus	36.76	34.46
KRH22919	Soybean	nucleus	32.38	33.4
KRH41885	Soybean	nucleus	21.9	30.26
KRH60588	Soybean	nucleus	22.1	29.0
KRH58582	Soybean	nucleus	22.48	26.82
KRH38986	Soybean	nucleus	23.62	26.16
KRH42485	Soybean	nucleus	22.48	26.11
KRH48724	Soybean	nucleus	23.43	25.47

Protein Annotations

EntrezGene:100801182	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02008210	EnsemblPlantsGene:GLYMA_13G139000	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:JKD-like	UniProt:K7LZN2
ProteinID:KRH19849.1	EnsemblPlants:KRH19850	ProteinID:KRH19850	ProteinID:KRH19850.1	PFAM:PF12171	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000233CD73
InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:25156632..25160098

Molecular Weight (calculated)

56455.3 Da

IEP (calculated)

9.802

GRAVY (calculated)

-0.663

Length

525 amino acids

Sequence
(BLAST)

001: MQMMPGDPFS LSTSIGGFTQ DKQNTNPNPK PNPPPKKKRN LPGTPDPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE
101: VRKKVYICPE QTCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD SFITHRAFCD ALAEESARLT
201: SVTTTNLNFK SEEGGNNVMN SQQHGLGGHG LIGAQSLQNV SGIPQFGSHG FRLDFNGMEQ QIRPSLSLWL NQGNHQMNSN NNNINSNNNS ASDAGPNYMS
301: SSGLPEIVQM AHANALMGCS SSMVSNFGGV HAGSNSSSAN LSLGKRGEAC GSTVVDLASI YNNSEGQNKN SKPASPMSAT ALLQKAAQMG STRSTNPSIF
401: SGSFGVINSP SSQTTSLNNN NNGGAAMMLA SNTSTAAANA NDFSSLRHSS NSFDQLVMQT NAQLQSEPVK LKLHSNGMEN NLTRDFLGVS GGGGGGGGPQ
501: FLPQELGKFA SMGSPMGLSQ FTSNQ

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.