Factsheet for Solyc09g007550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092370.1.1
Solyc06g075250.2.1
Solyc07g053570.2.1
Solyc09g007550.2.1
Solyc10g074680.1.1
Solyc10g084180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	Solyc07g053570.2.1	AT1G03840.1	17785527
AT5G03150.1	Solyc10g074680.1.1	AT3G54220.1	17785527
AT5G03150.1	Solyc02g092370.1.1	AT4G37650.1	17785527
AT5G03150.1	Solyc06g075250.2.1	AT5G03150.1	17785527
AT5G03150.1	Solyc09g007550.2.1	AT5G03150.1	17785527
AT5G03150.1	Solyc10g084180.1.1	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004390	Potato	nucleus	94.55	95.18
VIT_08s0040g02100.t01	Wine grape	nucleus	55.56	51.83
KRH67672	Soybean	nucleus	54.47	48.64
KRH19850	Soybean	nucleus	55.56	48.57
KRG95964	Soybean	nucleus	53.59	48.24
KRH32442	Soybean	nucleus	54.9	47.37
AT5G03150.1	Thale cress	nucleus	47.93	43.74
CDY10404	Canola	nucleus	47.93	43.39
CDX70328	Canola	nucleus	47.93	42.8
CDY11241	Canola	nucleus	46.84	42.74
Bra005741.1-P	Field mustard	nucleus	46.84	42.66
Bra009549.1-P	Field mustard	nucleus	47.93	42.64
CDX80854	Canola	nucleus	46.84	42.57
CDY44344	Canola	nucleus	46.19	42.4
Solyc11g069240.1.1	Tomato	nucleus	40.52	41.43
Solyc10g084180.1.1	Tomato	nucleus	44.23	41.18
Solyc01g099340.2.1	Tomato	nucleus	37.69	40.8
GSMUA_Achr7P22720_001	Banana	mitochondrion	24.4	39.86
Solyc08g063040.2.1	Tomato	nucleus	40.09	39.4
Solyc06g075250.2.1	Tomato	nucleus, plastid	44.23	38.45
Solyc09g074780.2.1	Tomato	nucleus, plastid	41.61	36.73
Solyc07g053570.2.1	Tomato	nucleus	40.09	36.65
Solyc09g065670.2.1	Tomato	nucleus	37.47	36.6
Solyc06g062670.2.1	Tomato	nucleus	38.78	35.39
Solyc04g080130.2.1	Tomato	nucleus	38.13	34.93
Solyc04g008500.2.1	Tomato	nucleus	39.0	34.62
Solyc03g121660.2.1	Tomato	nucleus	39.87	33.76
Solyc01g005060.2.1	Tomato	nucleus	24.62	33.33
Solyc06g072360.2.1	Tomato	nucleus	25.71	30.1
Solyc05g054030.2.1	Tomato	nucleus	23.31	28.08
Solyc02g062940.2.1	Tomato	nucleus	37.25	26.07
Solyc03g098070.2.1	Tomato	nucleus	19.39	24.45

Protein Annotations

EnsemblPlants:Solyc09g007550.2.1	EnsemblPlantsGene:Solyc09g007550.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF99	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000276B8F0	UniProt:K4CQE4	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr9:+:1151049..1153414

Molecular Weight (calculated)

51317.4 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.775

Length

459 amino acids

Sequence
(BLAST)

001: MMSGDLFSIH QQQHQQVLVE QNPNPKANSS SKKRRNLPGT PDPDAEVIAI SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRNKQEIVKK
101: KVYICPEKSC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHTKTC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARITTTN
201: NLNFNQQQQQ PVGVSQIGTS FAQDFTSMTT VNPLHQHQQK PRLSLWLNQA NNNMSSQSSN LFGLPDHHMV QIPSHNMFGT NQILNPTPTT TTTTNTNTNT
301: NTPATPNPPI PMSATALLQK AAQMGSTKST PNYFSNTFGV MHSSSSPSSN NTTQIFNNNE IHQAFAKQTE DYNQTENILI NGCPNMNSSV NSKAINLDQA
401: LLQTGGMHNQ NVHFNLHNSL TRDFLGMGNE GGQPFLPQEL AKFASINSAM GLSHYSTGH

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.