Factsheet for Solyc01g099340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063501	Potato	nucleus	78.54	92.5
Solyc09g007550.2.1	Tomato	nucleus, plastid	40.8	37.69
GSMUA_Achr8P10040_001	Banana	nucleus	39.39	37.36
Solyc11g069240.1.1	Tomato	nucleus	38.68	36.53
Solyc08g063040.2.1	Tomato	nucleus	39.15	35.55
Solyc10g084180.1.1	Tomato	nucleus	41.27	35.5
Solyc09g074780.2.1	Tomato	nucleus, plastid	42.92	35.0
GSMUA_Achr11P...	Banana	nucleus	33.73	34.54
Solyc06g075250.2.1	Tomato	nucleus, plastid	42.45	34.09
Solyc04g080130.2.1	Tomato	nucleus	40.09	33.93
Solyc09g065670.2.1	Tomato	nucleus	37.03	33.4
Solyc07g053570.2.1	Tomato	nucleus	39.15	33.07
Solyc06g062670.2.1	Tomato	nucleus	39.15	33.0
Solyc04g008500.2.1	Tomato	nucleus	39.86	32.69
Solyc03g121660.2.1	Tomato	nucleus	40.33	31.55
Os01t0935000-01	Rice	nucleus	35.14	31.3
Solyc01g005060.2.1	Tomato	nucleus	24.53	30.68
TraesCS3B01G497200.1	Wheat	nucleus	36.56	30.33
TraesCS3D01G449900.1	Wheat	nucleus	36.32	30.26
Zm00001d042202_P001	Maize	nucleus	36.79	29.71
EES04172	Sorghum	nucleus	36.32	29.62
Solyc06g072360.2.1	Tomato	nucleus	25.71	27.81
Solyc05g054030.2.1	Tomato	nucleus	23.11	25.72
Solyc02g062940.2.1	Tomato	nucleus	39.15	25.3
Solyc03g098070.2.1	Tomato	nucleus	19.1	22.25

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013087	UniProt:K4B0X1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF59	SMART:SM00355	SUPFAM:SSF57667	EnsemblPlantsGene:Solyc01g099340.2	EnsemblPlants:Solyc01g099340.2.1	UniParc:UPI0002768D69
InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:89623348..89627535

Molecular Weight (calculated)

47452.4 Da

IEP (calculated)

8.851

GRAVY (calculated)

-0.898

Length

424 amino acids

Sequence
(BLAST)

001: MSNSNLSSGN SSEEADETPY VLSSTSDGSS AHQQHSQTNN KKRRKLPGNP DPSAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ
101: KTSNEIKKRV YICPESSCIH HNPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT KEYKCDCGTI FSRRDSFVTH RAFCDALAEE
201: NNKVNQVLAS TTQPLATGPE LISTTQMLNL PQIRNSNMKI PSIPLNMAGS MFSSSSGFNQ LGTNSSNMSS ATALLQQAAQ MGATVNNNMN STLFNGVQIP
301: IQSNHDHDQN ETQIGSILQG FGGSMLQNNG DDHHKSSRVL QNEQGWFNNN NNNSNTGLFN EKQRTLNKEA GHSNEESLTL DFLGIGGMRH RNLHEMHQHQ
401: QEMSFEQQQV NHQSIQRVNS IWDD

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.