Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006385 | Potato | nucleus | 96.13 | 96.3 |
| KRH47108 | Soybean | nucleus | 56.46 | 61.45 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 60.15 | 61.28 |
| KRH44134 | Soybean | nucleus | 58.12 | 59.43 |
| KRH23306 | Soybean | nucleus | 52.03 | 58.75 |
| KRH10015 | Soybean | nucleus | 51.48 | 58.74 |
| CDY70142 | Canola | nucleus | 19.56 | 58.24 |
| Solyc08g063040.2.1 | Tomato | nucleus | 41.88 | 48.61 |
| Solyc06g062670.2.1 | Tomato | nucleus | 43.17 | 46.52 |
| Zm00001d008842_P001 | Maize | nucleus | 36.72 | 42.61 |
| Bra030886.1-P | Field mustard | nucleus | 34.32 | 42.56 |
| Os01t0195000-01 | Rice | nucleus | 38.19 | 42.51 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 37.08 | 41.19 |
| EES02307 | Sorghum | nucleus | 37.82 | 41.16 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 37.45 | 40.93 |
| AT1G55110.2 | Thale cress | nucleus | 34.32 | 40.88 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 37.27 | 40.64 |
| Zm00001d039467_P001 | Maize | nucleus | 37.27 | 40.64 |
| Solyc09g065670.2.1 | Tomato | nucleus | 35.24 | 40.64 |
| Solyc01g099340.2.1 | Tomato | nucleus | 31.55 | 40.33 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 33.76 | 39.87 |
| Solyc11g069240.1.1 | Tomato | nucleus | 33.03 | 39.87 |
| Solyc10g084180.1.1 | Tomato | nucleus | 34.87 | 38.34 |
| Solyc04g080130.2.1 | Tomato | nucleus | 35.24 | 38.12 |
| Solyc07g053570.2.1 | Tomato | nucleus | 35.06 | 37.85 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 35.24 | 36.17 |
| Solyc04g008500.2.1 | Tomato | nucleus | 33.95 | 35.59 |
| Solyc01g005060.2.1 | Tomato | nucleus | 22.14 | 35.4 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 33.58 | 35.0 |
| Solyc05g054030.2.1 | Tomato | nucleus | 21.77 | 30.97 |
| Solyc06g072360.2.1 | Tomato | nucleus | 22.32 | 30.87 |
| CDY70938 | Canola | cytosol, nucleus | 14.76 | 29.3 |
| Solyc02g062940.2.1 | Tomato | nucleus | 35.06 | 28.96 |
| Solyc03g098070.2.1 | Tomato | nucleus | 17.16 | 25.55 |
Protein Annotations
| EnsemblPlants:Solyc03g121660.2.1 | EnsemblPlantsGene:Solyc03g121660.2 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00027655A8 |
| UniProt:K4BMW5 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:69759755..69762472
Molecular Weight (calculated)
59238.3 Da
IEP (calculated)
8.868
GRAVY (calculated)
-0.705
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDLMNQQAQ VPGVVMEENM SNLTSASGEA SVSSSNRNDN NNNNNNNIYP HHQYNFAPPN QQTQPAQQIK KKRNQPGNPD PEAEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSKEIRKKVY VCPETSCVHH DPARALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTK
201: EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAITANPIL PSQAGSSTSQ MNFQFQPFNH EIPVTFSLKK EQQTGFNLRP EIPPWLLVGG GGGPGPGPGP
301: PQPQPIDLSS SIFQSSRFSD QDYTQSHQHH QQGFMNPNPS LSGPTSGAMA SPHISATALL QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT
401: ATAAESVSNA TDFGLNLSSR EDLPTGFFNS LASYGNKAAN PSAVITPVTI PLSTAPHPTP STLQDMMNSF SSVNPTGFEG SNFEDPFSIL NPKNNNGSGN
501: DDMTKDFLGL RPLSHSDIFN IAGLVNSTPN ETQSQNHKTW QS
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSKEIRKKVY VCPETSCVHH DPARALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTK
201: EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAITANPIL PSQAGSSTSQ MNFQFQPFNH EIPVTFSLKK EQQTGFNLRP EIPPWLLVGG GGGPGPGPGP
301: PQPQPIDLSS SIFQSSRFSD QDYTQSHQHH QQGFMNPNPS LSGPTSGAMA SPHISATALL QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT
401: ATAAESVSNA TDFGLNLSSR EDLPTGFFNS LASYGNKAAN PSAVITPVTI PLSTAPHPTP STLQDMMNSF SSVNPTGFEG SNFEDPFSIL NPKNNNGSGN
501: DDMTKDFLGL RPLSHSDIFN IAGLVNSTPN ETQSQNHKTW QS
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.