Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37489 | Canola | nucleus | 74.73 | 73.91 |
| CDY09390 | Canola | nucleus | 40.11 | 61.34 |
| CDY04118 | Canola | nucleus | 40.11 | 61.34 |
| CDY14910 | Canola | nucleus | 40.11 | 54.89 |
| CDY72283 | Canola | nucleus | 56.04 | 53.97 |
| CDY53540 | Canola | nucleus | 52.2 | 48.97 |
| CDY04117 | Canola | nucleus | 54.4 | 46.26 |
| Bra030886.1-P | Field mustard | nucleus | 89.01 | 37.07 |
| AT1G55110.2 | Thale cress | nucleus | 85.71 | 34.29 |
| CDX96046 | Canola | nucleus | 41.21 | 32.19 |
| CDX97521 | Canola | nucleus | 79.67 | 29.9 |
| CDY55238 | Canola | nucleus | 79.67 | 29.84 |
| CDY51742 | Canola | nucleus | 78.57 | 29.55 |
| CDX75732 | Canola | nucleus | 71.43 | 29.35 |
| CDX82515 | Canola | nucleus | 66.48 | 27.44 |
| CDX97281 | Canola | nucleus, plastid | 55.49 | 26.23 |
| CDX91304 | Canola | nucleus, plastid | 56.04 | 25.25 |
| CDY24490 | Canola | nucleus | 56.04 | 23.45 |
| KRH23306 | Soybean | nucleus | 61.54 | 23.33 |
| CDX77936 | Canola | nucleus | 55.49 | 23.17 |
| KRH10015 | Soybean | nucleus | 59.89 | 22.95 |
| Os01t0195000-01 | Rice | nucleus | 59.34 | 22.18 |
| CDX86010 | Canola | nucleus | 54.4 | 22.1 |
| CDY67009 | Canola | nucleus | 57.69 | 22.06 |
| Zm00001d008842_P001 | Maize | nucleus | 56.59 | 22.06 |
| CDY53836 | Canola | nucleus | 54.4 | 21.85 |
| CDY59418 | Canola | nucleus | 49.45 | 21.79 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 58.24 | 21.72 |
| CDY22307 | Canola | nucleus | 54.95 | 21.55 |
| CDX94759 | Canola | nucleus | 54.95 | 21.55 |
| EES02307 | Sorghum | nucleus | 58.79 | 21.49 |
| KRH47108 | Soybean | nucleus | 58.79 | 21.49 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 58.24 | 21.37 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 58.24 | 21.33 |
| Zm00001d039467_P001 | Maize | nucleus | 58.24 | 21.33 |
| CDY18188 | Canola | nucleus | 56.04 | 21.29 |
| CDX89862 | Canola | nucleus | 56.04 | 21.25 |
| CDY32514 | Canola | nucleus | 56.04 | 20.82 |
| CDY11241 | Canola | nucleus | 57.14 | 20.68 |
| CDY45271 | Canola | nucleus | 47.25 | 20.67 |
| CDX81372 | Canola | nucleus | 55.49 | 20.65 |
| CDY57128 | Canola | nucleus | 55.49 | 20.53 |
| PGSC0003DMT400012504 | Potato | nucleus | 56.59 | 20.52 |
| Solyc06g062670.2.1 | Tomato | nucleus | 56.59 | 20.48 |
| CDY44344 | Canola | nucleus | 56.04 | 20.4 |
| CDX80854 | Canola | nucleus | 56.59 | 20.4 |
| CDX81653 | Canola | nucleus | 52.2 | 20.34 |
| CDY10404 | Canola | nucleus | 56.59 | 20.32 |
| CDY15814 | Canola | nucleus | 52.75 | 20.3 |
| KRH44134 | Soybean | nucleus | 58.79 | 20.19 |
| CDX70328 | Canola | nucleus | 56.59 | 20.04 |
| PGSC0003DMT400006385 | Potato | nucleus | 58.24 | 19.59 |
| Solyc03g121660.2.1 | Tomato | nucleus | 58.24 | 19.56 |
| CDY04203 | Canola | plastid | 40.66 | 19.22 |
| CDY45270 | Canola | nucleus | 47.25 | 19.11 |
| CDX84974 | Canola | nucleus | 40.11 | 19.06 |
| CDY60366 | Canola | nucleus | 40.11 | 19.06 |
| CDY17615 | Canola | nucleus | 54.4 | 18.79 |
| CDY36123 | Canola | nucleus | 39.01 | 18.78 |
| CDY51986 | Canola | nucleus | 39.01 | 18.78 |
| CDY17614 | Canola | nucleus, plastid | 52.75 | 18.71 |
| CDY03081 | Canola | nucleus | 53.85 | 18.7 |
| CDY03080 | Canola | nucleus, plastid | 52.75 | 18.6 |
| CDY17440 | Canola | nucleus | 48.35 | 18.41 |
| CDY04204 | Canola | nucleus | 35.71 | 18.11 |
| CDY07400 | Canola | nucleus | 40.66 | 17.92 |
| CDY09400 | Canola | nucleus | 41.76 | 17.35 |
| CDY09391 | Canola | nucleus | 53.85 | 17.28 |
| CDY15811 | Canola | nucleus | 53.85 | 17.25 |
| CDY17620 | Canola | nucleus | 41.76 | 17.12 |
| CDY04102 | Canola | nucleus | 41.76 | 16.93 |
| CDY60095 | Canola | nucleus | 40.66 | 16.74 |
| CDY15800 | Canola | nucleus | 40.66 | 16.74 |
| CDY63960 | Canola | nucleus | 41.21 | 16.63 |
| CDY12268 | Canola | nucleus | 36.26 | 14.8 |
| CDY68983 | Canola | nucleus | 24.73 | 11.51 |
| CDY70938 | Canola | cytosol, nucleus | 0.0 | 0.0 |
| CDY67587 | Canola | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078JX02 | UniProt:A0A078JX02 | EnsemblPlants:CDY70142 | ProteinID:CDY70142 |
| ProteinID:CDY70142.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00096785001 |
| InterPro:IPR013087 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE7A76 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng66930DBnaCnng66930D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JX02]
Coordinates
chrLK041279:-:3..666
Molecular Weight (calculated)
21019.0 Da
IEP (calculated)
10.222
GRAVY (calculated)
-1.212
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMNKDMLYH HQQQQVEENM SNLTSASGDR ASVSSGNRTE TSGSNFHYNT NPNQQQEEQC LAPQPSQKKK RNQPGNPDPE AEVLALSPKT LMATNRFICE
101: ICNKGFQRDQ NLQLHKRGHN LPWKLKQRSN KDVIRKKVYV CPEPNCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KK
101: ICNKGFQRDQ NLQLHKRGHN LPWKLKQRSN KDVIRKKVYV CPEPNCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KK
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.