Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121660.2.1 | Tomato | nucleus | 96.3 | 96.13 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 60.63 | 61.65 |
| KRH47108 | Soybean | nucleus | 56.38 | 61.24 |
| KRH44134 | Soybean | nucleus | 57.86 | 59.06 |
| KRH23306 | Soybean | nucleus | 51.94 | 58.54 |
| KRH10015 | Soybean | nucleus | 51.39 | 58.53 |
| CDY70142 | Canola | nucleus | 19.59 | 58.24 |
| PGSC0003DMT400021189 | Potato | nucleus | 41.96 | 48.5 |
| PGSC0003DMT400012504 | Potato | nucleus | 42.7 | 46.02 |
| Zm00001d008842_P001 | Maize | nucleus | 36.78 | 42.61 |
| Bra030886.1-P | Field mustard | nucleus | 34.38 | 42.56 |
| Os01t0195000-01 | Rice | nucleus | 38.26 | 42.51 |
| PGSC0003DMT400063501 | Potato | nucleus | 27.91 | 41.94 |
| EES02307 | Sorghum | nucleus | 38.08 | 41.37 |
| PGSC0003DMT400049788 | Potato | nucleus | 36.41 | 41.3 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 37.15 | 41.19 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 37.52 | 40.93 |
| AT1G55110.2 | Thale cress | nucleus | 34.38 | 40.88 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 37.34 | 40.64 |
| Zm00001d039467_P001 | Maize | nucleus | 37.34 | 40.64 |
| PGSC0003DMT400004390 | Potato | nucleus | 34.2 | 40.57 |
| PGSC0003DMT400024272 | Potato | nucleus | 35.49 | 38.79 |
| PGSC0003DMT400020945 | Potato | nucleus | 35.86 | 38.72 |
| PGSC0003DMT400027159 | Potato | nucleus | 34.75 | 38.21 |
| PGSC0003DMT400013174 | Potato | nucleus | 35.3 | 37.75 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 36.6 | 37.71 |
| PGSC0003DMT400075837 | Potato | nucleus | 34.57 | 36.1 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 34.75 | 35.61 |
| PGSC0003DMT400029550 | Potato | nucleus | 29.21 | 34.88 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 24.03 | 29.75 |
| PGSC0003DMT400069306 | Potato | nucleus | 22.37 | 29.44 |
| CDY70938 | Canola | cytosol, nucleus | 14.79 | 29.3 |
| PGSC0003DMT400040064 | Potato | nucleus | 34.75 | 25.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006385 | EnsemblPlantsGene:PGSC0003DMG400002495 | EntrezGene:102585450 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400002495 | RefSeq:XP_006342975.1 | RefSeq:XP_006342976.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029542FC | UniProt:M0ZR95 | MapMan:15.5.15 | : |
Description
C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002495]
Coordinates
chr3:-:60960343..60963300
Molecular Weight (calculated)
59247.5 Da
IEP (calculated)
8.980
GRAVY (calculated)
-0.686
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMKDLMNQQ AQVPVVVMEE NMSNLTSASG EASVSSSNRN DNNNNNNNNI YPHHQYNFAP PNQQTQPAQQ IKKKRNQPGN PDPEAEVIAL SPKTLMATNR
101: FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEIRKK VYVCPETSCV HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG
201: TKEYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITGNP ILPSQAGSST SQMNFQFQPF NHEIPVTFSL KKEQQTGFNL RPEIPPWLLV GGGGGPGPGP
301: PQPHPIDLSS SIFQSSRFSD QDYTQSHHHQ QGGFMNPNPS LSGPTSGAMA SPHISATALL QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT
401: ATAAVSVSNT TDFGLNLSSR EDLTTGFFNS LASYGNKAAN PSAVIAPVTI PLSTAPHPTP SLQDMMNSYS SANPTGFEGS NFDDPFSILN PKNENGGGND
501: DMTKDFLGLR PLSHSDIFNI AGLVKYTPNE NQSQNHKTWQ S
101: FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEIRKK VYVCPETSCV HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG
201: TKEYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITGNP ILPSQAGSST SQMNFQFQPF NHEIPVTFSL KKEQQTGFNL RPEIPPWLLV GGGGGPGPGP
301: PQPHPIDLSS SIFQSSRFSD QDYTQSHHHQ QGGFMNPNPS LSGPTSGAMA SPHISATALL QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT
401: ATAAVSVSNT TDFGLNLSSR EDLTTGFFNS LASYGNKAAN PSAVIAPVTI PLSTAPHPTP SLQDMMNSYS SANPTGFEGS NFDDPFSILN PKNENGGGND
501: DMTKDFLGLR PLSHSDIFNI AGLVKYTPNE NQSQNHKTWQ S
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.