Factsheet for PGSC0003DMT400024272

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004390
PGSC0003DMT400008694
PGSC0003DMT400011839
PGSC0003DMT400027159
PGSC0003DMT400030280
PGSC0003DMT400043358
PGSC0003DMT400055239
PGSC0003DMT400058477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	PGSC0003DMT400043358	AT3G54220.1	17785527
AT1G03840.1	PGSC0003DMT400055239	AT4G37650.1	17785527
AT1G03840.1	PGSC0003DMT400004390	AT5G03150.1	17785527
AT1G03840.1	PGSC0003DMT400008694	AT5G03150.1	17785527
AT1G03840.1	PGSC0003DMT400027159	AT5G03150.1	17785527
AT5G44160.1	PGSC0003DMT400011839	AT1G50420.1	21798944
AT5G44160.1	PGSC0003DMT400058477	AT1G50420.1	21798944
AT5G44160.1	PGSC0003DMT400030280	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053570.2.1	Tomato	nucleus	94.14	92.83
CDY14910	Canola	nucleus	23.03	85.71
Bra036013.1-P	Field mustard	nucleus	25.05	78.48
CDY72283	Canola	nucleus	29.7	77.78
GSMUA_Achr7P14780_001	Banana	nucleus	41.01	56.86
AT5G44160.1	Thale cress	nucleus	52.32	55.58
Zm00001d039254_P001	Maize	nucleus	39.19	54.8
CDX94759	Canola	nucleus	51.31	54.74
Bra033724.1-P	Field mustard	nucleus	51.11	54.53
CDY22307	Canola	nucleus	50.91	54.31
CDY18188	Canola	nucleus	51.31	53.03
Bra015271.1-P	Field mustard	nucleus	50.91	52.28
AT1G03840.1	Thale cress	nucleus	53.33	52.17
CDX89862	Canola	nucleus	50.51	52.08
Os01t0242200-01	Rice	nucleus	43.64	52.05
CDY32514	Canola	nucleus	51.11	51.63
Bra032541.1-P	Field mustard	nucleus	51.11	51.63
GSMUA_Achr9P06650_001	Banana	nucleus	37.17	50.14
GSMUA_Achr6P27030_001	Banana	nucleus	34.14	47.74
GSMUA_Achr10P...	Banana	nucleus	36.16	47.48
VIT_12s0028g03030.t01	Wine grape	nucleus	40.4	46.84
TraesCS3B01G195900.1	Wheat	nucleus	45.25	45.62
EES02157	Sorghum	nucleus	44.04	45.32
TraesCS3D01G171300.1	Wheat	nucleus	44.44	44.81
TraesCS3A01G170700.1	Wheat	nucleus	44.24	44.79
KRH22332	Soybean	nucleus	41.21	43.04
KRH26995	Soybean	nucleus	41.21	42.5
Zm00001d009030_P002	Maize	nucleus	36.77	40.72
PGSC0003DMT400004390	Potato	nucleus	37.37	40.57
PGSC0003DMT400063501	Potato	nucleus	29.49	40.56
PGSC0003DMT400021189	Potato	nucleus	37.78	39.96
PGSC0003DMT400049788	Potato	nucleus	36.16	37.53
PGSC0003DMT400020945	Potato	nucleus	36.36	35.93
PGSC0003DMT400012504	Potato	nucleus	36.36	35.86
PGSC0003DMT400027159	Potato	nucleus	35.56	35.77
PGSC0003DMT400013174	Potato	nucleus	36.57	35.77
PGSC0003DMT400006385	Potato	nucleus	38.79	35.49
PGSC0003DMT400008694	Potato	nucleus, plastid	36.97	34.66
PGSC0003DMT400029550	Potato	nucleus	31.72	34.66
PGSC0003DMT400075837	Potato	nucleus	36.16	34.56
PGSC0003DMT400033039	Potato	nucleus, plastid	36.16	34.1
PGSC0003DMT400069306	Potato	nucleus	23.43	28.22
PGSC0003DMT400079735	Potato	nucleus, plastid	23.84	27.0
Os07t0581366-00	Rice	cytosol, nucleus	32.32	25.24
PGSC0003DMT400040064	Potato	nucleus	35.96	24.18
Zm00001d006682_P001	Maize	nucleus	34.34	22.91
EER97442	Sorghum	nucleus	34.14	21.56
TraesCS2B01G218900.1	Wheat	nucleus	34.75	21.45
Zm00001d021932_P001	Maize	nucleus	34.14	20.74
TraesCS2A01G188400.2	Wheat	nucleus	34.75	20.72
TraesCS2D01G199300.3	Wheat	nucleus	34.55	20.24
HORVU2Hr1G036710.3	Barley	nucleus	29.7	16.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400024272	EnsemblPlantsGene:PGSC0003DMG400009382	EntrezGene:102588795	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26
PFAM:PF00096	PFscan:PS50157	PGSC:PGSC0003DMG400009382	RefSeq:XP_006348832.2	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029547B8	UniProt:M1AJS6	MapMan:15.5.15	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009382]

Coordinates

chr7:+:49781764..49784343

Molecular Weight (calculated)

54540.9 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.624

Length

495 amino acids

Sequence
(BLAST)

001: MTDEVISNGF THDNSIEGSN PPPLKKKRNL PGNPDPEAEV IALSPKTLMA TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK
101: ACVHHHPSRA LGDLTGIKKH YCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTIFSRRDS FVTHRAFCDA LAEETARVTA ASNMHNPLAM
201: ENNINYHFIG APLGPNMAQH FSSLFKPVSN NNENSDPLRR DQLSLWNNIG VAQEQDQIGI NINNLREIHQ ISPLFHHTSP APTPVYDANA LLASRNSNAP
301: PVSYNNNHIN WDQFIGTKIS PINNAEQLSN TSSANISVPS LFSSQQQIAL SSSTANMSAT ALLQKAAQIG ATTTTATDPS IFLGNFTMNN CNNNKNNDND
401: NNKFCGFYVS TPTTNNSIST SLGSDVDQSS SVNDFSATIH PIQMYPPSKR RHIQIEDSVK GVGGGAGSGA GGQTRDFLGV GVQSICHPSS INGWI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.