Factsheet for Os01t0242200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0948200-00
Os03t0433200-00
Os05t0378200-00
Os05t0378500-00
Os06t0211500-00
Os07t0586900-01
Os08t0538700-01
Os11t0124300-01
Os11t0141500-00
Os11t0141550-01
Os11t0141700-00
Os11t0533500-01
Os12t0122000-01
Os12t0138100-00
Os12t0138166-00
Os12t0138200-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Os11t0124300-01	AT3G54220.1	17785527
AT1G03840.1	Os12t0122000-01	AT3G54220.1	17785527
AT1G03840.1	Os03t0433200-00	AT4G37650.1	17785527
AT1G03840.1	Os07t0586900-01	AT4G37650.1	17785527
AT5G44160.1	Os01t0948200-00	AT1G50420.1	21798944
AT5G44160.1	Os05t0378200-00	AT1G50420.1	21798944
AT5G44160.1	Os05t0378500-00	AT1G50420.1	21798944
AT5G44160.1	Os06t0211500-00	AT1G50420.1	21798944
AT5G44160.1	Os11t0141500-00	AT1G50420.1	21798944
AT5G44160.1	Os11t0141550-01	AT1G50420.1	21798944
AT5G44160.1	Os11t0141700-00	AT1G50420.1	21798944
AT5G44160.1	Os12t0138100-00	AT1G50420.1	21798944
AT5G44160.1	Os12t0138166-00	AT1G50420.1	21798944
AT5G44160.1	Os12t0138200-00	AT1G50420.1	21798944
AT5G44160.1	Os08t0538700-01	AT3G12280.1	22921914
AT5G44160.1	Os11t0533500-01	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14910	Canola	nucleus	25.3	78.95
CDY72283	Canola	nucleus	34.46	75.66
Bra036013.1-P	Field mustard	nucleus	27.71	72.78
Zm00001d039254_P001	Maize	nucleus	58.07	68.08
TraesCS3D01G171300.1	Wheat	nucleus	77.83	65.78
TraesCS3A01G170700.1	Wheat	nucleus	77.35	65.64
TraesCS3B01G195900.1	Wheat	nucleus	77.59	65.58
EES02157	Sorghum	nucleus	74.46	64.24
Bra015271.1-P	Field mustard	nucleus	57.59	49.59
CDX89862	Canola	nucleus	57.35	49.58
CDY18188	Canola	nucleus	56.87	49.27
Bra032541.1-P	Field mustard	nucleus	57.83	48.98
CDY32514	Canola	nucleus	57.83	48.98
CDX94759	Canola	nucleus	53.73	48.06
AT5G44160.1	Thale cress	nucleus	53.73	47.85
Zm00001d009030_P002	Maize	nucleus	51.33	47.65
Bra033724.1-P	Field mustard	nucleus	53.25	47.63
CDY22307	Canola	nucleus	53.25	47.63
VIT_12s0028g03030.t01	Wine grape	nucleus	48.43	47.07
AT1G03840.1	Thale cress	nucleus	56.87	46.64
Solyc07g053570.2.1	Tomato	nucleus	53.01	43.82
PGSC0003DMT400024272	Potato	nucleus	52.05	43.64
KRH49655	Soybean	nucleus	36.63	41.99
KRH25657	Soybean	nucleus	47.47	41.83
KRH22332	Soybean	nucleus	46.99	41.14
KRH55868	Soybean	nucleus	46.51	40.72
KRH26995	Soybean	nucleus	46.27	40.0
Os01t0195000-01	Rice	nucleus	46.27	39.43
Os01t0935000-01	Rice	nucleus	42.89	37.4
Os01t0572300-01	Rice	nucleus	47.95	37.06
Os09t0555700-02	Rice	nucleus	46.27	35.89
Os03t0197800-00	Rice	nucleus	47.47	35.69
Os08t0554400-02	Rice	nucleus	46.02	34.85
Os10t0419200-01	Rice	nucleus	39.28	34.32
Os02t0518500-00	Rice	nucleus	39.52	33.33
Os02t0672100-01	Rice	nucleus	46.02	31.06
Os04t0566400-02	Rice	nucleus	44.34	30.02
Os03t0237250-01	Rice	plastid	28.92	27.4
Os07t0581366-00	Rice	cytosol, nucleus	39.52	25.87
Os08t0467100-01	Rice	nucleus	28.67	22.33

Protein Annotations

EnsemblPlants:Os01t0242200-01	EnsemblPlantsGene:Os01g0242200	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	PFAM:PF00096
PFscan:PS50157	ProteinID:BAD81624.1	ProteinID:BAF04467.1	ProteinID:BAS71275.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000049E812	UniProt:Q5NA81	MapMan:15.5.15	:

Description

indeterminate domain 8Zinc finger, C2H2-type domain containing protein. (Os01t0242200-01)

Coordinates

chr1:+:7847490..7849833

Molecular Weight (calculated)

43998.1 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.419

Length

415 amino acids

Sequence
(BLAST)

001: MATSEAAAIS NPFAPLTNHQ QEHPPPPPPP AKKKRNLPGT PDPEAEVIAL SPRTLMATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR
101: VYVCPEKSCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ETARLNAASG
201: AAAAAAAATA TSLCGQSYLF AGSGGPGMAG MRPNMMMPPQ FDAAQLSWLY GNGKLSSSNA SELTSATAAA KEAESVPSVF SNQQHAKPAA PTDMSATALL
301: QKAAQIGAVT STAAMPLVSP FEPTKPGGAT ASPADECGKF DGAALFAAAS HHNANLGGAM SELTGAAGNV PYDVLSAVRH HAGLKDAGGV GREETRDFLG
401: VGVQALCSSS IHGWI

Best Arabidopsis Sequence Match ( AT5G44160.1 )
(BLAST)

001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI

Arabidopsis Description

NUCZinc finger protein NUTCRACKER [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.