Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14910 | Canola | nucleus | 25.06 | 80.45 |
| Bra036013.1-P | Field mustard | nucleus | 27.4 | 74.05 |
| CDY72283 | Canola | nucleus | 32.55 | 73.55 |
| KRH22332 | Soybean | nucleus | 68.62 | 61.81 |
| KRH25657 | Soybean | nucleus | 66.74 | 60.51 |
| KRH26995 | Soybean | nucleus | 67.21 | 59.79 |
| KRH49655 | Soybean | nucleus | 50.12 | 59.12 |
| KRH55868 | Soybean | nucleus | 65.11 | 58.65 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 46.14 | 55.18 |
| Zm00001d039254_P001 | Maize | nucleus | 42.15 | 50.85 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 43.56 | 50.68 |
| GSMUA_Achr10P... | Banana | nucleus | 44.03 | 49.87 |
| Os01t0242200-01 | Rice | nucleus | 47.07 | 48.43 |
| GSMUA_Achr6P27030_001 | Banana | nucleus | 39.81 | 48.02 |
| Zm00001d009030_P002 | Maize | nucleus | 50.12 | 47.87 |
| AT5G44160.1 | Thale cress | nucleus | 47.31 | 43.35 |
| Bra033724.1-P | Field mustard | nucleus | 46.37 | 42.67 |
| CDX94759 | Canola | nucleus | 46.37 | 42.67 |
| CDY22307 | Canola | nucleus | 46.14 | 42.46 |
| CDX89862 | Canola | nucleus | 47.54 | 42.29 |
| CDY18188 | Canola | nucleus | 47.31 | 42.17 |
| Bra015271.1-P | Field mustard | nucleus | 47.54 | 42.12 |
| EES02157 | Sorghum | nucleus | 47.07 | 41.79 |
| CDY32514 | Canola | nucleus | 47.54 | 41.43 |
| Bra032541.1-P | Field mustard | nucleus | 47.54 | 41.43 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 42.39 | 40.86 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 46.6 | 40.7 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 46.6 | 40.53 |
| PGSC0003DMT400024272 | Potato | nucleus | 46.84 | 40.4 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 46.37 | 40.33 |
| VIT_18s0001g12220.t01 | Wine grape | nucleus, plastid | 46.84 | 40.32 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 46.37 | 40.24 |
| AT1G03840.1 | Thale cress | nucleus | 47.54 | 40.12 |
| Solyc07g053570.2.1 | Tomato | nucleus | 46.6 | 39.64 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 46.6 | 39.33 |
| VIT_06s0004g03070.t01 | Wine grape | nucleus | 45.43 | 38.88 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 34.43 | 37.31 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 46.37 | 37.22 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 44.5 | 35.78 |
| VIT_04s0008g01160.t01 | Wine grape | nucleus | 43.79 | 35.55 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 45.9 | 34.27 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 42.86 | 30.6 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 46.14 | 29.8 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 29.27 | 29.41 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 40.52 | 27.29 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 28.57 | 26.81 |
| Zm00001d006682_P001 | Maize | nucleus | 42.39 | 24.39 |
| EER97442 | Sorghum | nucleus | 42.62 | 23.21 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 42.62 | 22.69 |
| Zm00001d021932_P001 | Maize | nucleus | 42.39 | 22.21 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 42.62 | 21.93 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 42.62 | 21.54 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 37.47 | 18.43 |
Protein Annotations
| ArrayExpress:VIT_12s0028g03030 | EMBL:FN595235 | EnsemblPlants:VIT_12s0028g03030.t01 | EnsemblPlantsGene:VIT_12s0028g03030 | Gene3D:3.30.160.60 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF26 | PFscan:PS50157 | ProteinID:CBI21907 | ProteinID:CBI21907.3 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0001BE1E21 | UniProt:E0CTJ2 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr12:+:3778166..3780152
Molecular Weight (calculated)
47175.9 Da
IEP (calculated)
9.452
GRAVY (calculated)
-0.681
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQKMAAEAI PNGFIQNPIG GSNPPTIKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSS KEPRKRVYVC
101: PEKTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HTKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAEETAR VTAASNINNG
201: TINYHFMGTS LAPSMPQHFS SIFKPISSND EATDQTRRGL SLWMGQGSQG HETMGTNLQE IHQLRSSMSP GSSSNNTEDQ LTSSTSLPLS NVKEAAGSQI
301: VSVPSLYSSQ HHSHQTPLGN MSATALLQKA AQMGATSADP FLGSFGLKCD SSLVQDGNKF CGLYTANQLP TNDMENPKDL STFNQLQMYP AKRRNTQNDD
401: STGGQTRDFL GVGVQTICHP SSINGWM
101: PEKTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HTKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAEETAR VTAASNINNG
201: TINYHFMGTS LAPSMPQHFS SIFKPISSND EATDQTRRGL SLWMGQGSQG HETMGTNLQE IHQLRSSMSP GSSSNNTEDQ LTSSTSLPLS NVKEAAGSQI
301: VSVPSLYSSQ HHSHQTPLGN MSATALLQKA AQMGATSADP FLGSFGLKCD SSLVQDGNKF CGLYTANQLP TNDMENPKDL STFNQLQMYP AKRRNTQNDD
401: STGGQTRDFL GVGVQTICHP SSINGWM
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.