Factsheet for VIT_07s0129g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g01660.t01
VIT_04s0008g02780.t01
VIT_08s0040g02100.t01
VIT_08s0056g00050.t01
VIT_12s0028g03030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	VIT_12s0028g03030.t01	AT1G03840.1	17785527
AT4G37650.1	VIT_04s0008g02780.t01	AT3G12280.1	22921914
AT4G37650.1	VIT_08s0056g00050.t01	AT3G54220.1	17446396
AT4G37650.1	VIT_08s0056g00050.t01	AT3G54220.1	17785527
AT4G37650.1	VIT_08s0056g00050.t01	AT3G54220.1	18500650
AT4G37650.1	VIT_08s0056g00050.t01	AT3G54220.1	22921914
AT4G37650.1	VIT_08s0040g02100.t01	AT5G03150.1	17785527
AT4G37650.1	VIT_03s0017g01660.t01	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055239	Potato	nucleus	67.41	73.19
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	74.09	72.19
KRH77129	Soybean	plastid	67.81	70.38
KRH28353	Soybean	plastid	67.61	69.29
KRH58109	Soybean	cytosol, plastid	67.0	66.33
KRH04424	Soybean	plastid	66.8	65.61
Bra010606.1-P	Field mustard	nucleus	56.07	59.19
AT4G37650.1	Thale cress	cytosol, plastid	61.13	56.87
CDY50264	Canola	nucleus, plastid	54.25	56.42
TraesCS2D01G194800.1	Wheat	cytosol, plastid	43.12	55.76
Bra011777.1-P	Field mustard	cytosol, plastid	59.92	55.53
CDX72645	Canola	cytosol, plastid	59.72	55.45
CDY44032	Canola	cytosol, plastid	58.7	55.24
Bra017842.1-P	Field mustard	cytosol, plastid	59.31	55.08
VIT_00s0226g00070.t01	Wine grape	plastid	47.77	54.13
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	54.25	50.38
GSMUA_Achr4P16460_001	Banana	nucleus	53.64	49.91
GSMUA_Achr8P30950_001	Banana	mitochondrion	53.04	49.43
Zm00001d021973_P001	Maize	nucleus	51.42	42.91
Zm00001d006721_P001	Maize	nucleus	50.4	42.49
OQU90176	Sorghum	nucleus, plastid	50.61	41.81
Os07t0586900-01	Rice	plastid	50.81	41.69
TraesCS2B01G214600.1	Wheat	nucleus, plastid	50.0	41.51
TraesCS2A01G192600.1	Wheat	plastid	49.8	41.41
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	50.0	40.96
HORVU2Hr1G035730.4	Barley	cytosol, plastid	46.96	38.93
Zm00001d029607_P001	Maize	plastid	48.58	38.1
EER94653	Sorghum	plastid	49.39	36.75
VIT_12s0059g02770.t01	Wine grape	cytosol	26.32	29.21
VIT_07s0129g00340.t01	Wine grape	plastid	23.08	25.05
VIT_09s0002g01190.t01	Wine grape	nucleus	25.3	22.94

Protein Annotations

EntrezGene:100263197	wikigene:100263197	MapMan:15.5.12	MapMan:26.3.1.4	ProteinID:CCB57738	ProteinID:CCB57738.1
UniProt:F6HSS8	EMBL:FN596246	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0045930
GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202	EntrezGene:LOC100263197	wikigene:LOC100263197	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	TIGR:TC64214	InterPro:TF_GRAS
UniParc:UPI0001985D82	ArrayExpress:VIT_07s0129g00030	EnsemblPlantsGene:VIT_07s0129g00030	EnsemblPlants:VIT_07s0129g00030.t01	unigene:Vvi.10183	RefSeq:XP_002267068
RefSeq:XP_002267068.1	RefSeq:XP_003632486	RefSeq:XP_003632486.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:15325067..15326712

Molecular Weight (calculated)

55983.6 Da

IEP (calculated)

6.109

GRAVY (calculated)

-0.449

Length

494 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QSDQSYNSSR TSSSSRSSRQ NHHHHHQEDE ECFNFFMDEE DFSSSSSKHY YPYQQQTHPS TTTTPTTTNT STPTHHAFEP TEFSFSPARD
101: LHLEFNSSAS GKWASEILLE TARAIADKNS ARVQQLMWML NELSSPYGDT DQKLAAYFLQ ALFSRMTDSG ERCYRTLISA SEKTCSFEST RKMVLKFQEV
201: SPWTTFGHVA CNGAIMEALE GESKLHIIDI SNTYCTQWPT LLEALATRTD ETPHLRLTTV VTSKAGTGGM APVQKLMKEI GNRMEKFARL MGVPFKFNVL
301: HHSGDLSHLN LAELDIKDDE ALAVNCVGAL HSVTAFGNRR DIVVSSFRRL HPRIITVVEE EADLDVGVDG FDFVKGFQEC LRWFRVYLES LDESFPRTSN
401: ERLMLERAAG RAIVDLVACP PSESIERRET ATRWSQRLHA SGFSPVSFSD EVCDDVRALL RRYKEGWSMT QSSDAGIFLS WKDQPVVWTS AWKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.