Factsheet for VIT_03s0017g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_07s0129g00030.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G41920.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G41920.1	VIT_07s0129g00030.t01	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29089	Soybean	mitochondrion	77.15	77.15
PGSC0003DMT400030652	Potato	cytosol	68.78	73.97
KRH24117	Soybean	plastid	73.98	73.48
Bra025456.1-P	Field mustard	mitochondrion	40.27	72.36
Solyc07g043330.1.1	Tomato	plastid	70.36	71.99
CDY64484	Canola	mitochondrion	39.82	71.54
AT5G41920.1	Thale cress	cytosol	62.22	67.9
CDY27670	Canola	cytosol	59.73	65.35
Os07t0567700-02	Rice	cytosol	67.42	65.21
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	45.02	64.61
Zm00001d021826_P001	Maize	cytosol	65.84	64.38
TraesCS2B01G228000.1	Wheat	cytosol	65.38	64.37
TraesCS2D01G208500.1	Wheat	cytosol	65.16	64.14
TraesCS2A01G200700.1	Wheat	cytosol	64.93	63.78
KXG36498	Sorghum	cytosol, plastid	66.06	63.48
HORVU0Hr1G003230.2	Barley	mitochondrion	61.54	58.75
VIT_07s0005g03700.t01	Wine grape	cytosol	41.4	37.58
VIT_19s0015g01930.t01	Wine grape	cytosol	31.22	33.41
VIT_18s0076g00200.t01	Wine grape	cytosol	23.76	32.21
VIT_08s0056g00050.t01	Wine grape	nucleus	55.43	31.33
VIT_06s0009g02390.t01	Wine grape	cytosol	29.64	27.64
VIT_13s0019g01220.t01	Wine grape	cytosol	29.41	27.2
VIT_17s0000g10300.t01	Wine grape	nucleus	31.45	26.78
VIT_11s0016g04630.t01	Wine grape	plastid	31.0	25.75
VIT_14s0006g00640.t01	Wine grape	cytosol	32.58	25.31
VIT_01s0011g05260.t01	Wine grape	cytosol	32.58	24.41
VIT_19s0085g00540.t01	Wine grape	cytosol	28.96	24.15
VIT_14s0068g01610.t01	Wine grape	plastid	34.84	23.05
VIT_02s0025g04000.t01	Wine grape	plastid	31.9	21.49
VIT_04s0023g01660.t01	Wine grape	cytosol	26.02	18.76

Protein Annotations

EntrezGene:100854772	wikigene:100854772	MapMan:15.5.12	ProteinID:CCB58032	ProteinID:CCB58032.1	UniProt:F6HTM2
EMBL:FN596248	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0048366	GO:GO:0090610	InterPro:IPR005202	EntrezGene:LOC100854772
wikigene:LOC100854772	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF35	InterPro:TF_GRAS
UniParc:UPI000198613E	ArrayExpress:VIT_03s0017g01660	EnsemblPlantsGene:VIT_03s0017g01660	EnsemblPlants:VIT_03s0017g01660.t01	unigene:Vvi.12854	RefSeq:XP_003631733
RefSeq:XP_003631733.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:17798541..17800303

Molecular Weight (calculated)

47949.1 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.092

Length

442 amino acids

Sequence
(BLAST)

001: MLQSLVPQSP IGSNPNPNST SSVAMKTKRV EREHLAGAES SGDREDEQQP LKRPNVSGEA VVEVEEPVEE AESSGLRLLG LLLQCAECVA MDNLDDASDL
101: LPEISELSSP FGSSPERVAA YFADALQARI ISSCLGTYSP LAIKALTLSQ NQRICNALQS YNSISPLIKF SHFTANQAIF QALDGEDRVH VIDLDIMQGL
201: QWPGLFHILA SRSRKIKSVR VTGVGSSIEL LEATGRRLAD FASSLGLPFE FHALEGKVGN ITDPSQLGVR PSEATVVHWM HHCLYDITGS DLGTLRLLTL
301: LRPKLITIVE QDLSHGGSFL GRFVEALHYY SALFDALGDG LGVDSLERHT VEQQLLGSEI RNIVAVGGPK RTGEVKVDRW GDELSRIGFR PVSLGGNPAA
401: QASLLLGMFP WKGYTLVEEN GSLKLGWKDL SLLTASAWQP SD

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.