Factsheet for VIT_17s0000g10300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g110950.1.1	Tomato	cytosol	69.75	68.3
PGSC0003DMT400039455	Potato	cytosol	69.94	68.11
KRH03910	Soybean	cytosol	64.74	65.37
KRH57194	Soybean	cytosol	64.35	65.36
GSMUA_Achr8P01180_001	Banana	nucleus	56.07	63.68
HORVU3Hr1G088820.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.59	53.08
TraesCS3A01G392600.1	Wheat	cytosol	47.21	51.26
TraesCS3A01G392400.1	Wheat	cytosol	51.06	51.06
TraesCS3B01G424600.1	Wheat	cytosol	51.06	51.06
TraesCS3D01G385500.1	Wheat	cytosol	51.06	51.06
TraesCS3A01G392500.1	Wheat	cytosol	50.29	50.48
TraesCS3B01G424500.1	Wheat	cytosol	50.1	50.29
TraesCS3D01G385400.1	Wheat	cytosol	49.9	50.1
HORVU3Hr1G088780.2	Barley	cytosol	49.9	48.78
EES01920	Sorghum	cytosol	48.94	47.3
Zm00001d042472_P001	Maize	cytosol	48.75	47.03
VIT_19s0085g00540.t01	Wine grape	cytosol	35.07	34.34
VIT_19s0015g01930.t01	Wine grape	cytosol	25.63	32.2
VIT_18s0076g00200.t01	Wine grape	cytosol	20.04	31.9
VIT_03s0017g01660.t01	Wine grape	plastid	26.78	31.45
VIT_13s0019g01220.t01	Wine grape	cytosol	27.75	30.13
VIT_11s0016g04630.t01	Wine grape	plastid	30.83	30.08
VIT_06s0009g02390.t01	Wine grape	cytosol	26.4	28.9
VIT_14s0068g01610.t01	Wine grape	plastid	36.42	28.29
VIT_07s0005g03700.t01	Wine grape	cytosol	25.82	27.52
VIT_14s0006g00640.t01	Wine grape	cytosol	29.87	27.24
VIT_01s0011g05260.t01	Wine grape	cytosol	29.09	25.59
VIT_02s0025g04000.t01	Wine grape	plastid	28.9	22.87
VIT_04s0023g01660.t01	Wine grape	cytosol	22.54	19.09
VIT_08s0056g00050.t01	Wine grape	nucleus	27.94	18.54

Protein Annotations

EntrezGene:100263271	wikigene:100263271	MapMan:15.5.12	MapMan:26.9.2.3	ProteinID:CCB42890	ProteinID:CCB42890.1
UniProt:F6GSG2	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100263271	wikigene:LOC100263271	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF24	InterPro:TF_GRAS	UniParc:UPI00015CDBBA	ArrayExpress:VIT_17s0000g10300	EnsemblPlantsGene:VIT_17s0000g10300
EnsemblPlants:VIT_17s0000g10300.t01	RefSeq:XP_002263040	RefSeq:XP_002263040.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:12556730..12558304

Molecular Weight (calculated)

57845.8 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.237

Length

519 amino acids

Sequence
(BLAST)

001: MASDLLSEER SDEVSGLDTS LSAQAYYSRS YLPIFQNGSA TNWFHYSDEA RNHKRLKRTQ SIAESIGSNS SLYSGGKSYS NSSSSFINRS SSTNSLNSLP
101: RLHFRDHIWT YTQRYLAAEA VEEAAAAMIS AAEGEVEEDG SGDGMRLVQL LIACAEAVAC RDKTHASSLL SELRANALVF GSSFQRVASC FVQGLADRLS
201: LVQPLGAVGF IAPSINPLDT AWEKKEEALR LVYEICPHIK FGHFVANASI LEAFEGENFA HVVDLGMTLG LAHGQQWRQL IHSLANRAGR PPRRLRITGV
301: GLCVDRFKII GEELEAYAQD LDINLEFSAV ESNLENLRPE DIKREDGEAL VVNSILQLHC VVKESRGALN SVLQKINELS PKVLVLVEQD SSHNGPFFLG
401: RFMEALHYYS AIFDSLEAML PKYDTRRAKI EQFYFGEEIK NIVSCEGPAR VERHERVDQW RRRMSRAGFQ AAPIKMMAQA KQWLGKVKAC EGYNIMEEKG
501: CLVLGWKSKP IVAASCWKC

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.